Purification of proteins containing zinc finger domains using immobilized metal ion affinity chromatography

Protein Expression and Purification - Tập 79 Số 1 - Trang 88-95 - 2011
Irena Voráčková1, Šárka Suchanová2, Pavel Ulbrich2, William E. Diehl3, Tomáš Ruml2
1Department of Biochemistry and Microbiology, Institute of Chemical Technology, Prague, Czech Republic
2Department of Biochemistry and Microbiology, Institute of Chemical Technology, Technicka 5, 166 28 Prague 6, Czech Republic
3Pathology and Laboratory Medicine Department, Emory University, Atlanta, GA 30329, USA

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Tài liệu tham khảo

Ueda, 2003, Current and prospective applications of metal ion-protein binding, J. Chromatogr. A, 988, 1, 10.1016/S0021-9673(02)02057-5

Chant, 2005, Attachment of a histidine tag to the minimal zinc finger protein of the Aspergillus nidulans gene regulatory protein AreA causes a conformational change at the DNA-binding site, Protein Expr. Purif., 39, 152, 10.1016/j.pep.2004.10.017

Fonda, 2002, Attachment of histidine tags to recombinant tumor necrosis factor-alpha drastically changes its properties, Sci. World J., 2, 1312, 10.1100/tsw.2002.215

Arnau, 2006, Current strategies for the use of affinity tags and tag removal for the purification of recombinant proteins, Protein Expr. Purif., 48, 1, 10.1016/j.pep.2005.12.002

Waugh, 2005, Making the most of affinity tags, Trends Biotechnol., 23, 316, 10.1016/j.tibtech.2005.03.012

Nilsson, 1997, Affinity fusion strategies for detection, purification, and immobilization of recombinant proteins, Protein Expr. Purif., 11, 1, 10.1006/prep.1997.0767

Block, 2009, Immobilized-metal affinity chromatography (IMAC): a review, 439, 10.1016/S0076-6879(09)63027-5

Branden, 1991

Miller, 1985, Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes, EMBO J., 4, 1609, 10.1002/j.1460-2075.1985.tb03825.x

Vogt, 1997, Retroviral virions and genomes, 27

Gorelick, 1990, Noninfectious human immunodeficiency virus type 1 mutants deficient in genomic RNA, J. Virol., 64, 3207, 10.1128/jvi.64.7.3207-3211.1990

Poon, 1996, Charged amino acid residues of human immunodeficiency virus type 1 nucleocapsid p7 protein involved in RNA packaging and infectivity, J. Virol., 70, 6607, 10.1128/jvi.70.10.6607-6616.1996

Fitzgerald, 1991, Physicochemical properties of cloned nucleocapsid protein from HIV. Interactions with metal ions, Biochemistry, 30, 5195, 10.1021/bi00235a012

Summers, 1992, Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1, Protein Sci., 1, 563, 10.1002/pro.5560010502

DeJong, 1993, A single cDNA, hTFIIA/alpha, encodes both the p35 and p19 subunits of human TFIIA, Genes Dev., 7, 2220, 10.1101/gad.7.11.2220

Hochuli, 1987, New metal chelate adsorbent selective for proteins and peptides containing neighbouring histidine residues, J. Chromatogr., 411, 177, 10.1016/S0021-9673(00)93969-4

Hurt, 2003, Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection, Proc. Natl. Acad. Sci. USA, 100, 12271, 10.1073/pnas.2135381100

Liu, 2005, Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein, BMC Bioinformatics, 6, 176, 10.1186/1471-2105-6-176

Young, 2000, An accessory DNA binding motif in the zinc finger protein Adr1 assists stable binding to DNA and can be replaced by a third finger, Biochemistry, 39, 567, 10.1021/bi992049r

Foster, 1998, Chemical shift as a probe of molecular interfaces: NMR studies of DNA binding by the three amino-terminal zinc finger domains from transcription factor IIIA, J. Biomol. NMR, 12, 51, 10.1023/A:1008290631575

Ulbrich, 2006, Distinct roles for nucleic acid in in vitro assembly of purified Mason–Pfizer monkey virus CANC proteins, J. Virol., 80, 7089, 10.1128/JVI.02694-05

Rumlova-Klikova, 2000, Analysis of Mason–Pfizer monkey virus Gag domains required for capsid assembly in bacteria: role of the N-terminal proline residue of CA in directing particle shape, J. Virol., 74, 8452, 10.1128/JVI.74.18.8452-8459.2000

Sambrook, 1989

Ye, 2004, Tagging retrovirus vectors with a metal binding peptide and one-step purification by immobilized metal affinity chromatography, J. Virol., 78, 9820, 10.1128/JVI.78.18.9820-9827.2004

Ueda, 2001, Ni(II)-based immobilized metal ion affinity chromatography of recombinant human prolactin from periplasmic Escherichia coli extracts, J. Chromatogr. A, 922, 165, 10.1016/S0021-9673(01)00875-5

Liesiene, 1997, Immobilized metal affinity chromatography of human growth hormone. Effect of ligand density, J. Chromatogr. A, 764, 27, 10.1016/S0021-9673(96)00869-2

Rumlova, 2001, Comparison of classical and affinity purification techniques of Mason–Pfizer monkey virus capsid protein: the alteration of the product by an affinity tag, Protein Expr. Purif., 23, 75, 10.1006/prep.2001.1488

Buning, 1996, The histidine tail of recombinant DNA binding proteins may influence the quality of interaction with DNA, Anal. Biochem., 234, 227, 10.1006/abio.1996.0078

Murphy, 2003, Nucleic acid separations utilizing immobilized metal affinity chromatography, Biotechnol. Prog., 19, 982, 10.1021/bp025563o

Rabilloud, 1999, Solubilization of proteins in 2-D electrophoresis. An outline, Methods Mol. Biol., 112, 9

Rumlova, 2003, Specific in vitro cleavage of Mason–Pfizer monkey virus capsid protein: evidence for a potential role of retroviral protease in early stages of infection, Virology, 310, 310, 10.1016/S0042-6822(03)00128-4

Arnold, 1991, Metal-affinity separations: a new dimension in protein processing, Biotechnology (NY), 9, 151

Gasser, 2008, Protein folding and conformational stress in microbial cells producing recombinant proteins: a host comparative overview, Microb. Cell Fact., 7, 11, 10.1186/1475-2859-7-11

Sonigo, 1986, Nucleotide sequence of Mason–Pfizer monkey virus: an immunosuppressive D-type retrovirus, Cell, 45, 375, 10.1016/0092-8674(86)90323-5

Adachi, 1986, Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone, J. Virol., 59, 284, 10.1128/jvi.59.2.284-291.1986

Bolanos-Garcia, 2006, Structural analysis and classification of native proteins from E. coli commonly co-purified by immobilised metal affinity chromatography, Biochim. Biophys. Acta, 1760, 1304, 10.1016/j.bbagen.2006.03.027

Porath, 1975, Metal chelate affinity chromatography, a new approach to protein fractionation, Nature, 258, 598, 10.1038/258598a0

Porath, 1992, Immobilized metal ion affinity chromatography, Protein Expr. Purif., 3, 263, 10.1016/1046-5928(92)90001-D

Maisano, 1989, Immobilized metal-ion affinity chromatography of human growth hormone, J. Chromatogr., 472, 422, 10.1016/S0021-9673(00)94144-X

Asante-Appiah, 1998, Purification of untagged retroviral integrases by immobilized metal ion affinity chromatography, Protein Expr. Purif., 12, 105, 10.1006/prep.1997.0818

Gaberc-Porekar, 2001, Perspectives of immobilized-metal affinity chromatography, J. Biochem. Biophys. Methods, 49, 335, 10.1016/S0165-022X(01)00207-X

Andersson, 1991, Immobilized metal ion affinity chromatography of serum albumins, Bioseparation, 2, 15

Campbell, 1995, Self-assembly in vitro of purified CA-NC proteins from Rous sarcoma virus and human immunodeficiency virus type 1, J. Virol., 69, 6487, 10.1128/jvi.69.10.6487-6497.1995