Purification of human iPSC-derived cells at large scale using microRNA switch and magnetic-activated cell sorting
Tài liệu tham khảo
Ahlgren, 1998, β-Cell-specific inactivation of the mouseIpf1/Pdx1 gene results in loss of the β-cell phenotype and maturity onset diabetes, Genes Dev., 12, 1763, 10.1101/gad.12.12.1763
Ambros, 2001, microRNAs: tiny regulators with great potential, Cell, 107, 823, 10.1016/S0092-8674(01)00616-X
Anders, 2015, HTSeq--a Python framework to work with high-throughput sequencing data, Bioinformatics, 31, 166, 10.1093/bioinformatics/btu638
Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5
Burridge, 2014, Chemically defined generation of human cardiomyocytes, Nat. Methods, 11, 855, 10.1038/nmeth.2999
Chong, 2014, Human embryonic-stem-cell-derived cardiomyocytes regenerate non-human primate hearts, Nature, 510, 273, 10.1038/nature13233
Dobin, 2013, STAR: ultrafast universal RNA-seq aligner, Bioinformatics, 29, 15, 10.1093/bioinformatics/bts635
Dubois, 2011, SIRPA is a specific cell-surface marker for isolating cardiomyocytes derived from human pluripotent stem cells, Nat. Biotechnol., 29, 1011, 10.1038/nbt.2005
Dunn, 2011, Revisiting traditional risk factors for rejection and graft loss after kidney transplantation, Am. J. Transplant., 11, 2132, 10.1111/j.1600-6143.2011.03640.x
Eliasson, 2017, The small RNA miR-375 - a pancreatic islet abundant miRNA with multiple roles in endocrine beta cell function, Mol. Cell. Endocrinol., 456, 95, 10.1016/j.mce.2017.02.043
Endo, 2016, High-resolution identification and separation of living cell types by multiple microRNA-responsive synthetic mRNAs, Sci. Rep., 6, 21991, 10.1038/srep21991
Endo, 2019, Numerical operations in living cells by programmable RNA devices, Sci. Adv., 5, eaax0835, 10.1126/sciadv.aax0835
Fujita, 2022, A versatile and robust cell purification system with an RNA-only circuit composed of microRNA-responsive ON and OFF switches, Sci. Adv., 8, eabj1793, 10.1126/sciadv.abj1793
Funakoshi, 2016, Enhanced engraftment, proliferation, and therapeutic potential in heart using optimized human iPSC-derived cardiomyocytes, Sci. Rep., 6, 19111, 10.1038/srep19111
Hatani, 2018, Nano-structural analysis of engrafted human induced pluripotent stem cell-derived cardiomyocytes in mouse hearts using a genetic-probe APEX2, Biochem. Biophys. Res. Commun., 505, 1251, 10.1016/j.bbrc.2018.10.020
Hatani, 2018, Induction of human induced pluripotent stem cells to cardiomyocytes using embryoid bodies, Methods Mol. Biol., 1816, 79, 10.1007/978-1-4939-8597-5_6
Hattori, 2012, Strategies for replacing myocytes with induced pluripotent stem in clinical protocols, Transplant. Rev., 26, 223, 10.1016/j.trre.2011.09.003
Karlsson, 2001, The role of pancreatic chromogranins in islet physiology, Curr. Mol. Med., 1, 727, 10.2174/1566524013363294
Langmead, 2012, Fast gapped-read alignment with Bowtie 2, Nat. Methods, 9, 357, 10.1038/nmeth.1923
Lee, 2017, Human pluripotent stem cell-derived atrial and ventricular cardiomyocytes develop from distinct mesoderm populations, Cell Stem Cell, 21, 179, 10.1016/j.stem.2017.07.003
Love, 2014, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 550, 10.1186/s13059-014-0550-8
Martin, 2011, Cutadapt removes adapter sequences from high-throughput sequencing reads, EMBnet, 17, 10, 10.14806/ej.17.1.200
Matsuura, 2018, Synthetic RNA-based logic computation in mammalian cells, Nat. Commun., 9, 4847, 10.1038/s41467-018-07181-2
Miki, 2015, Efficient detection and purification of cell populations using synthetic MicroRNA switches, Cell Stem Cell, 16, 699, 10.1016/j.stem.2015.04.005
Nakanishi, 2019, Mammalian gene circuits with biomolecule-responsive RNA devices, Curr. Opin. Chem. Biol., 52, 16, 10.1016/j.cbpa.2019.04.013
Ohno, 2020, Synthetic mRNA-based Systems in mammalian cells, Adv Biosyst., 4, e1900247, 10.1002/adbi.201900247
Ohnuki, 2009, Generation and characterization of human induced pluripotent stem cells, Current Protoc. Stem Cell Biol., Chapter 4
Osborn, 1989, Direct expression cloning of vascular cell adhesion molecule 1, a cytokine-induced endothelial protein that binds to lymphocytes, Cell, 59, 1203, 10.1016/0092-8674(89)90775-7
Protze, 2017, Sinoatrial node cardiomyocytes derived from human pluripotent cells function as a biological pacemaker, Nat. Biotechnol., 35, 56, 10.1038/nbt.3745
Rieck, 2012, Lineage determinants in early endocrine development, Semin. Cell Dev. Biol., 23, 673, 10.1016/j.semcdb.2012.06.005
Sanganalmath, 2013, Cell therapy for heart failure: a comprehensive overview of experimental and clinical studies, current challenges, and future directions, Circ. Res., 113, 810, 10.1161/CIRCRESAHA.113.300219
Shiba, 2016, Allogeneic transplantation of iPS cell-derived cardiomyocytes regenerates primate hearts, Nature, 538, 388, 10.1038/nature19815
Tohyama, 2013, Distinct metabolic flow enables large-scale purification of mouse and human pluripotent stem cell-derived cardiomyocytes, Cell Stem Cell, 12, 127, 10.1016/j.stem.2012.09.013
Toyoda, 2015, Cell aggregation optimizes the differentiation of human ESCs and iPSCs into pancreatic bud-like progenitor cells, Stem Cell Res., 14, 185, 10.1016/j.scr.2015.01.007
Virani, 2020, Heart disease and stroke statistics-2020 update: a report from the American heart association, Circulation, 141, e139, 10.1161/CIR.0000000000000757
Wang, 2001, Pdx1 level defines pancreatic gene expression pattern and cell lineage differentiation, J. Biol. Chem., 276, 25279, 10.1074/jbc.M101233200
Wang, 2012, RSeQC: quality control of RNA-seq experiments, Bioinformatics, 28, 2184, 10.1093/bioinformatics/bts356
Warren, 2010, Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA, Cell Stem Cell, 7, 618, 10.1016/j.stem.2010.08.012
Yang, 2008, Human cardiovascular progenitor cells develop from a KDR+ embryonic-stem-cell-derived population, Nature, 453, 524, 10.1038/nature06894