Proteomic analysis of grapevine (Vitis vinifera L.) leaf changes induced by transition to autotrophy and exposure to high light irradiance

Journal of Proteomics - Tập 91 - Trang 309-330 - 2013
R. Nilo-Poyanco1, D. Olivares2, A. Orellana1, P. Hinrichsen2,3, M. Pinto2,3
1FONDAP Centre for Genome Regulation, Núcleo Milenio en Biotecnología Celular Vegetal, Universidad Andrés Bello, Santiago, Chile
2Instituto de Investigaciones Agropecuarias (INIA), Centro La Platina, Santa Rosa 11, 610 Santiago, Chile
3The Centre for Advanced Studies in Fruit Sciences “CEAF”, INIA-Rayentué, Rengo, Chile

Tài liệu tham khảo

Masclaux, 2000, Characterization of the sink/source transition in tobacco (Nicotiana tabacum L.) shoots in relation to nitrogen management and leaf senescence, Planta, 211, 510, 10.1007/s004250000310 Jeong, 2004, Metabolic profiling of the sink-to-source transition in developing leaves of quaking aspen, Plant Physiol, 136, 3364, 10.1104/pp.104.044776 Marchi, 2005, Sink-source transition in peach leaves during shoot development, J Am Soc Hortic Sci, 130, 928, 10.21273/JASHS.130.6.928 Lamade, 2009, Changes in (13)C/(12)C of oil palm leaves to understand carbon use during their passage from heterotrophy to autotrophy, Rapid Commun Mass Spectrom, 23, 2586, 10.1002/rcm.4169 Li, 2010, The developmental dynamics of the maize leaf transcriptome, Nat Genet, 42, 1060, 10.1038/ng.703 1994 Yin, 2000, Photosynthetic acclimation of higher plants to growth in fluctuating light environments, Photosynth Res, 63, 97, 10.1023/A:1006303611365 Leakey, 2005, Physiological and ecological significance of sunflecks for dipterocarp seedlings, J Exp Bot, 56, 469, 10.1093/jxb/eri055 Allen, 2000, Stomatal behavior and photosynthetic performance under dynamic light regimes in a seasonally dry tropical rain forest, Oecologia, 122, 470, 10.1007/s004420050968 Reinbothe, 1996, Evolution of chlorophyll biosynthesis — the challenge to survive photooxidation, Cell, 86, 703, 10.1016/S0092-8674(00)80144-0 Bishop, 2002, Brassinosteroids and plant steroid hormone signaling, Plant Cell, 14, S97, 10.1105/tpc.001461 Romanowska, 2008, High light induced accumulation of two isoforms of the CF1 alpha-subunit in mesophyll and bundle sheath chloroplasts of C4 plants, Acta Biochim Pol, 55, 175, 10.18388/abp.2008_3110 Urban, 2008, Comparison of photosynthetic induction and transient limitations during the induction phase in young and mature leaves from three poplar clones, Tree Physiol, 28, 1189, 10.1093/treephys/28.8.1189 Yamamoto, 2008, Quality control of photosystem II: impact of light and heat stresses, Photosynth Res, 98, 589, 10.1007/s11120-008-9372-4 Kulheim, 2002, Rapid regulation of light harvesting and plant fitness in the field, Science, 297, 91, 10.1126/science.1072359 Burgos, 2011, Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light, Plant J, 66, 656, 10.1111/j.1365-313X.2011.04531.x Yoshida, 2011, Distinct responses of the mitochondrial respiratory chain to long- and short-term high-light environments in Arabidopsis thaliana, Plant Cell Environ, 34, 618, 10.1111/j.1365-3040.2010.02267.x Giribaldi, 2010, Heard it through the grapevine: proteomic perspective on grape and wine, J Proteomics, 73, 1647, 10.1016/j.jprot.2010.05.002 Ahsan, 2007, A comparative proteomic analysis of tomato leaves in response to waterlogging stress, Physiol Plant, 131, 555, 10.1111/j.1399-3054.2007.00980.x Giacomelli, 2006, High light response of the thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study, Plant Physiol, 141, 685, 10.1104/pp.106.080150 Milli, 2011, Proteomic analysis of the compatible interaction between Vitis vinifera and Plasmopara viticola, J Proteomics Pinto, 2011, Leaf development, temperature and light stress control of the expression of early light-inducible proteins (ELIPs) in Vitis vinifera L, Environ Exp Bot, 72, 278, 10.1016/j.envexpbot.2011.04.002 GuetaDahan, 1997, Salt and oxidative stress: similar and specific responses and their relation to salt tolerance in Citrus, Planta, 203, 460, 10.1007/s004250050215 Esterbauer, 1991, Chemistry and biochemistry of 4-hydroxynonenal, malonaldehyde and related aldehydes, Free Radic Biol Med, 11, 81, 10.1016/0891-5849(91)90192-6 Mishra, 1992, Function of photosynthetic apparatus of intact wheat leaves under high light and heat-stress and its relationship with peroxidation of thylakoid lipids, Plant Physiol, 98, 1, 10.1104/pp.98.1.1 Pang, 2011, Overexpression of SsCHLAPXs confers protection against oxidative stress induced by high light in transgenic Arabidopsis thaliana, Physiol Plant, 143, 355, 10.1111/j.1399-3054.2011.01515.x Nilo, 2010, Proteomic analysis of peach fruit mesocarp softening and chilling injury using difference gel electrophoresis (DIGE), BMC Genomics, 11, 43, 10.1186/1471-2164-11-43 Mechin, 2003, An efficient solubilization buffer for plant proteins focused in immobilized pH gradients, Proteomics, 3, 1299, 10.1002/pmic.200300450 Bradford, 1976, A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding, Anal Biochem, 72, 248, 10.1016/0003-2697(76)90527-3 Luhn, 2003, Using standard positions and image fusion to create proteome maps from collections of two-dimensional gel electrophoresis images, Proteomics, 3, 1117, 10.1002/pmic.200300433 Grove, 2008, Combination of statistical approaches for analysis of 2-DE data gives complementary results, J Proteome Res, 7, 5119, 10.1021/pr800424c Nilo-Poyanco, 2012, Assessment of Prunus persica fruit softening using a proteomics approach, J Proteomics, 75, 1618, 10.1016/j.jprot.2011.11.037 Kruskal, 1952, Use of ranks in one-criterion variance analysis, J Am Stat Assoc, 47, 583, 10.1080/01621459.1952.10483441 Wardlaw, 2000 Morrissey, 2009, Pomelo II: finding differentially expressed genes, Nucleic Acids Res, 37, W581, 10.1093/nar/gkp366 Valcu, 2007, Reproducibility of two-dimensional gel electrophoresis at different replication levels, J Proteome Res, 6, 4677, 10.1021/pr070396e Nie, 2007, Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications, Crit Rev Biotechnol, 27, 63, 10.1080/07388550701334212 Meunier, 2007, Assessment of hierarchical clustering methodologies for proteomic data mining, J Proteome Res, 6, 358, 10.1021/pr060343h Doherty, 1998, Analysis of changes in acute-phase plasma proteins in an acute inflammatory response and in rheumatoid arthritis using two-dimensional gel electrophoresis, Electrophoresis, 19, 355, 10.1002/elps.1150190234 Suckau, 2003, A novel MALDI LIFT-TOF/TOF mass spectrometer for proteomics, Anal Bioanal Chem, 376, 952, 10.1007/s00216-003-2057-0 Perkins, 1999, Probability-based protein identification by searching sequence databases using mass spectrometry data, Electrophoresis, 20, 3551, 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2 Altschul, 1990, Basic local alignment search tool, J Mol Biol, 215, 403, 10.1016/S0022-2836(05)80360-2 Moreno, 2005, Arabidopsis SHMT1, a serine hydroxymethyltransferase that functions in the photorespiratory pathway influences resistance to biotic and abiotic stress, Plant J, 41, 451, 10.1111/j.1365-313X.2004.02311.x Li, 1804, Abscisic acid pretreatment enhances salt tolerance of rice seedlings: proteomic evidence, Biochim Biophys Acta, 2010, 929 Nishimura, 2008, Molecular mechanisms of RuBisCO biosynthesis in higher plants, Plant Biotechnol, 25, 285, 10.5511/plantbiotechnology.25.285 Murakami, 2005, Functional dissection of two Arabidopsis PsbO proteins, FEBS J, 272, 2165, 10.1111/j.1742-4658.2005.04636.x Dreyfuss, 1994, Organization of the light-harvesting complex of photosystem I and its assembly during plastid development, Plant Physiol, 106, 841, 10.1104/pp.106.3.841 Maayan, 2008, Photosynthetic activity during olive (Olea europaea) leaf development correlates with plastid biogenesis and Rubisco levels, Physiol Plant, 134, 547, 10.1111/j.1399-3054.2008.01150.x Eckhardt, 2004, Recent advances in chlorophyll biosynthesis and breakdown in higher plants, Plant Mol Biol, 56, 1, 10.1007/s11103-004-2331-3 Osteryoung, 1998, Chloroplast division in higher plants requires members of two functionally divergent gene families with homology to bacterial ftsZ, Plant Cell, 10, 1991, 10.1105/tpc.10.12.1991 Hanania, 2007, Silencing of chaperonin 21, that was differentially expressed in inflorescence of seedless and seeded grapes, promoted seed abortion in tobacco and tomato fruits, Transgenic Res, 16, 515, 10.1007/s11248-006-9044-0 Stanne, 2009, Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role in Arabidopsis, Biochem J, 417, 257, 10.1042/BJ20081146 Kuo, 2012, CHAPERONIN 20 mediates iron superoxide dismutase (FeSOD) activity independent of its co-chaperonin role in Arabidopsis chloroplasts, New Phytol Sato, 2011, Carbon and nitrogen metabolism regulated by the ubiquitin–proteasome system, Plant Signal Behav, 6, 1465, 10.4161/psb.6.10.17343 Kalinski, 1995, Binding-protein expression is subject to temporal, developmental and stress-induced regulation in terminally differentiated soybean organs, Planta, 195, 611, 10.1007/BF00195722 Sui, 2006, Cloning of cDNAs encoding the three subunits of oxygen evolving complex in Nicotiana benthamiana and gene expression changes in tobacco leaves infected with Tobacco mosaic virus, Physiol Mol Plant Pathol, 68, 61, 10.1016/j.pmpp.2006.06.003 Zaharieva, 2011, Thermodynamic limitations of photosynthetic water oxidation at high proton concentrations, J Biol Chem, 286, 18222, 10.1074/jbc.M111.237941 Calderone, 2003, Crystal structure of the PsbQ protein of photosystem II from higher plants, EMBO Rep, 4, 900, 10.1038/sj.embor.embor923 Li, 2010, The rice light-regulated gene RA68 encodes a novel protein interacting with oxygen-evolving complex PsbO mature protein, Plant Mol Biol Report, 28, 136, 10.1007/s11105-009-0128-x Ettinger, 1991, Physiologically active chloroplasts contain pools of unassembled extrinsic proteins of the photosynthetic oxygen-evolving enzyme complex in the thylakoid lumen, J Cell Biol, 115, 321, 10.1083/jcb.115.2.321 Ifuku, 2010, Molecular functions of oxygen-evolving complex family proteins in photosynthetic electron flow, J Integr Plant Biol, 52, 723, 10.1111/j.1744-7909.2010.00976.x Yi, 2006, The PsbQ protein is required in Arabidopsis for photosystem II assembly/stability and photoautotrophy under low light conditions, J Biol Chem, 281, 26260, 10.1074/jbc.M603582200 Ido, 2009, Knockdown of the PsbP protein does not prevent assembly of the dimeric PSII core complex but impairs accumulation of photosystem II supercomplexes in tobacco, Biochim Biophys Acta, 1787, 873, 10.1016/j.bbabio.2009.03.004 Yi, 2005, The manganese-stabilizing protein is required for photosystem II assembly/stability and photoautotrophy in higher plants, J Biol Chem, 280, 16170, 10.1074/jbc.M501550200 Genkov, 2009, Highly conserved small subunit residues influence rubisco large subunit catalysis, J Biol Chem, 284, 30105, 10.1074/jbc.M109.044081 Raines, 2003, The Calvin cycle revisited, Photosynth Res, 75, 1, 10.1023/A:1022421515027 Cai, 2010, Characterization of photosystem II photochemistry in transgenic tobacco plants with lowered Rubisco activase content, J Plant Physiol, 167, 1457, 10.1016/j.jplph.2010.05.004 Portis, 1990, Rubisco activase, Biochim Biophys Acta, 1015, 15, 10.1016/0005-2728(90)90211-L Anderson, 2004, Both chloroplastic and cytosolic phosphoglycerate kinase isozymes are present in the pea leaf nucleus, Protoplasma, 223, 103 Bohler, 2010, Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves, Tree Physiol, 30, 1415, 10.1093/treephys/tpq082 Guan, 2009, Photorespiration and photoprotection of grapevine (Vitis vinifera L. cv. Cabernet Sauvignon) under water stress, Photosynthetica, 47, 437, 10.1007/s11099-009-0067-7 Liu, 2010, Phosphoproteomic identification and phylogenetic analysis of ribosomal P-proteins in Populus dormant terminal buds, Planta, 231, 571, 10.1007/s00425-009-1037-9 Rodriguez-Gabriel, 1998, Phosphorylation of ribosomal protein P0 is not essential for ribosome function but can affect translation, Biochemistry, 37, 16620, 10.1021/bi981396i Im, 2002, Identification and regulation of high light-induced genes in Chlamydomonas reinhardtii, Plant J, 30, 301, 10.1046/j.1365-313X.2001.01287.x Komenda, 2010, Role of FtsH2 in the repair of Photosystem II in mutants of the cyanobacterium Synechocystis PCC 6803 with impaired assembly or stability of the CaMn(4) cluster, Biochim Biophys Acta, 1797, 566, 10.1016/j.bbabio.2010.02.006 Khatoon, 2009, Quality control of photosystem II: thylakoid unstacking is necessary to avoid further damage to the D1 protein and to facilitate D1 degradation under light stress in spinach thylakoids, J Biol Chem, 284, 25343, 10.1074/jbc.M109.007740 Nixon, 2010, Recent advances in understanding the assembly and repair of photosystem II, Ann Bot, 106, 1, 10.1093/aob/mcq059 Jiang, 2006, Development of photosystems 2 and 1 during leaf growth in grapevine seedlings probed by chlorophyll a fluorescence transient and 820nm transmission in vivo, Photosynthetica, 44, 454, 10.1007/s11099-006-0050-5 da Silva, 2005, Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple Vitis species and development of a compendium of gene expression during berry development, Plant Physiol, 139, 574, 10.1104/pp.105.065748 Charron, 2008, The plant Apolipoprotein D ortholog protects Arabidopsis against oxidative stress, BMC Plant Biol, 8, 86, 10.1186/1471-2229-8-86 Pompelli, 2010, Photosynthesis and photoprotection in coffee leaves is affected by nitrogen and light availabilities in winter conditions, J Plant Physiol, 167, 1052, 10.1016/j.jplph.2010.03.001 Kim, 2010, Overexpression of rice isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species, Physiol Plant, 138, 1, 10.1111/j.1399-3054.2009.01290.x Yamauchi, 2011, NADPH-dependent reductases involved in the detoxification of reactive carbonyls in plants, J Biol Chem, 286, 6999, 10.1074/jbc.M110.202226 Mishra, 1992, Function of photosynthetic apparatus of intact wheat leaves under high light and heat stress and its relationship with peroxidation of thylakoid lipids, Plant Physiol, 98, 1, 10.1104/pp.98.1.1 Chi, 2009, Temperature-induced lipocalin is required for basal and acquired thermotolerance in Arabidopsis, Plant Cell Environ, 32, 917, 10.1111/j.1365-3040.2009.01972.x Yamazaki, 2002, Differential display analysis of gene expression in plants, Cell Mol Life Sci, 59, 1246, 10.1007/s00018-002-8503-x Hendrickson, 2004, Processes contributing to photoprotection of grapevine leaves illuminated at low temperature, Physiol Plant, 121, 272, 10.1111/j.0031-9317.2004.0324.x Kim, 2011, Transgenic poplar expressing Arabidopsis NDPK2 enhances growth as well as oxidative stress tolerance, Plant Biotechnol J, 9, 334, 10.1111/j.1467-7652.2010.00551.x Haque, 2010, ROS resistance in Pisum sativum cv. Alaska: the involvement of nucleoside diphosphate kinase in oxidative stress responses via the regulation of antioxidants, Planta, 232, 367, 10.1007/s00425-010-1173-2 Rathjen, 1992, Aberrant processing of polyphenol oxidase in a variegated grapevine mutant, Plant Physiol, 99, 1619, 10.1104/pp.99.4.1619 Flurkey, 2008, Proteolytic processing of polyphenol oxidase from plants and fungi, J Inorg Biochem, 102, 2160, 10.1016/j.jinorgbio.2008.08.007 Thipyapong, 2004, Suppression of polyphenol oxidases increases stress tolerance in tomato, Plant Sci, 167, 693, 10.1016/j.plantsci.2004.04.008 Havaux, 2000, Photodamage of the photosynthetic apparatus and its dependence on the leaf developmental stage in the npq1 Arabidopsis mutant deficient in the xanthophyll cycle enzyme violaxanthin de-epoxidase, Plant Physiol, 124, 273, 10.1104/pp.124.1.273 Adamska, 1999, Isolation of pigment-binding early light-inducible proteins from pea, Eur. J. Biochem., 260, 453, 10.1046/j.1432-1327.1999.00178.x Grimm, 1989, Transiently expressed early light-inducible thylakoid proteins share transmembrane domains with light-harvesting chlorophyll binding proteins, Plant Mol Biol, 13, 583, 10.1007/BF00027318 Galetskiy, 2011, Light stress photodynamics of chlorophyll-binding proteins in Arabidopsis thaliana thylakoid membranes revealed by high-resolution mass spectrometric studies, Russ J Bioorg Chem, 37, 105, 10.1134/S1068162011010079 Wetzel, 2009, Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.), J Exp Bot, 60, 1715, 10.1093/jxb/erp051 Jiang, 2006, Leaf orientation, photorespiration and xanthophyll cycle protect young soybean leaves against high irradiance in field, Environ Exp Bot, 55, 87, 10.1016/j.envexpbot.2004.10.003 Bertamini, 2003, Photoinhibition of photosynthesis in mature and young leaves of grapevine (Vitis vinifera L.), Plant Sci, 164, 635, 10.1016/S0168-9452(03)00018-9 North, 2005, Analysis of xanthophyll cycle gene expression during the adaptation of Arabidopsis to excess light and drought stress: changes in RNA steady-state levels do not contribute to short-term responses, Plant Sci, 169, 115, 10.1016/j.plantsci.2005.03.002 Lee, 2011, A dynamic model of proteome changes reveals new roles for transcript alteration in yeast, Mol Syst Biol, 7 Gorg, 2009, 2-DE with IPGs, Electrophoresis, 30, S122, 10.1002/elps.200900051 Shaw, 2003, Evaluation of saturation labelling two-dimensional difference gel electrophoresis fluorescent dyes, Proteomics, 3, 1181, 10.1002/pmic.200300439 Haynes, 2007, Subcellular shotgun proteomics in plants: looking beyond the usual suspects, Proteomics, 7, 2963, 10.1002/pmic.200700216 Van Cutsem, 2011, Gel-based and gel-free proteomic analysis of Nicotiana tabacum trichomes identifies proteins involved in secondary metabolism and in the (a)biotic stress response, Proteomics, 11, 440, 10.1002/pmic.201000356