Proteolytic events are relevant cellular responses during nervous system regeneration of the starfish Marthasterias glacialis

Journal of Proteomics - Tập 99 - Trang 1-25 - 2014
Catarina Ferraz Franco1, Romana Santos1,2, Ana Varela Coelho1
1Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
2Unidade de Investigação em Ciências Orais e Biomédicas, Faculdade de Medicina Dentária, Universidade de Lisboa, Portugal

Tài liệu tham khảo

Schwab, 2004, Nogo and axon regeneration, Curr Opin Neurobiol, 14, 118, 10.1016/j.conb.2004.01.004 Silver, 2004, Regeneration beyond the glial scar, Nat Rev Neurosci, 5, 146, 10.1038/nrn1326 Tang, 2003, Inhibitors of neuronal regeneration: mediators and signaling mechanisms, Neurochem Int, 42, 189, 10.1016/S0197-0186(02)00094-3 Sodergren, 2006, The genome of the sea urchin Strongylocentrotus purpuratus, Science, 314, 941, 10.1126/science.1133609 Franco, 2012, Radial nerve cord protein phosphorylation dynamics during starfish arm tip wound healing events, Electrophoresis, 33, 3764, 10.1002/elps.201200274 García-Arrarás, 2010, Echinoderms: potential model systems for studies on muscle regeneration, Curr Pharm Des, 16, 942, 10.2174/138161210790883426 Pasten, 2012, Characterization of proteolytic activities during intestinal regeneration of the sea cucumber, Holothuria glaberrima, Int J Dev Biol, 56, 681, 10.1387/ijdb.113473cp Pasten, 2012, Ubiquitin–proteasome system components are upregulated during intestinal regeneration, Genesis, 50, 350, 10.1002/dvg.20803 Patruno, 2001, Growth factors, heat-shock proteins and regeneration in echinoderms, J Exp Biol, 204, 843, 10.1242/jeb.204.5.843 Suárez-Castillo, 2004, Ependymin, a gene involved in regeneration and neuroplasticity in vertebrates, is overexpressed during regeneration in the echinoderm Holothuria glaberrima, Gene, 334, 133, 10.1016/j.gene.2004.03.023 Thorndyke, 2001, Molecular approach to echinoderm regeneration, Microsc Res Tech, 55, 474, 10.1002/jemt.1192 Thorndyke, 1999, Regeneration in echinoderms: cellular and molecular aspects, 159 Dupont, 2007, Bridging the regeneration gap: insights from echinoderm models, Nat Rev Genet, 8, 8, 10.1038/nrg1923-c1 Moss, 1998, Patterns of bromodeoxyuridine incorporation and neuropeptide immunoreactivity during arm regeneration in the starfish Asterias rubens, Philos Trans R Soc Lond B Biol Sci, 353, 421, 10.1098/rstb.1998.0220 Huet, 1975, Le role du sytème nerveux au cours de la régénération du Brás chez une Etoile de mer: Asterina gibbosa Penn. (Echinoderme, Astéride), J Embryol Exp Morphol, 33, 535 Candia Carnevali, 2010 Mashanov, 2008, Regeneration of the radial nerve cord in a holothurian: a promising new model system for studying post-traumatic recovery in the adult nervous system, Tissue Cell, 40, 351, 10.1016/j.tice.2008.03.004 San Miguel-Ruiz, 2009, Regeneration of the radial nerve cord in the sea cucumber Holothuria glaberrima, BMC Dev Biol, 9, 3, 10.1186/1471-213X-9-3 Willis, 2005, Differential transport and local translation of cytoskeletal, injury-response, and neurodegeneration protein mRNAs in axons, J Neurosci, 25, 778, 10.1523/JNEUROSCI.4235-04.2005 Yoo, 2010, Dynamics of axonal mRNA transport and implications for peripheral nerve regeneration, Exp Neurol, 223, 19, 10.1016/j.expneurol.2009.08.011 Donnelly, 2010, Subcellular communication through RNA transport and localized protein synthesis, Traffic, 11, 1498, 10.1111/j.1600-0854.2010.01118.x Gumy, 2010, The role of local protein synthesis and degradation in axon regeneration, Exp Neurol, 223, 28, 10.1016/j.expneurol.2009.06.004 Spira, 2001, Calcium, protease activation, and cytoskeleton remodeling underlie growth cone formation and neuronal regeneration, Cell Mol Neurobiol, 21, 591, 10.1023/A:1015135617557 Sun, 2010, Neuroproteomics approaches to decipher neuronal regeneration and degeneration, Mol Cell Proteomics, 9, 963, 10.1074/mcp.R900003-MCP200 Liu, 2001, Different signaling pathways mediate regenerative versus developmental sensory axon growth, J Neurosci, 21, RC164, 10.1523/JNEUROSCI.21-17-j0003.2001 Franco, 2011, A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development, Mol Cell Proteomics, 10, 10.1074/mcp.M110.002188 Van Niekerk, 2007, Sumoylation in axons triggers retrograde transport of the RNA-binding protein La, Proc Natl Acad Sci U S A, 104, 12913, 10.1073/pnas.0611562104 Martin, 2007, Emerging extranuclear roles of protein SUMOylation in neuronal function and dysfunction, Nat Rev Neurosci, 8, 948, 10.1038/nrn2276 Van Domselaar, 2010, Proteomic profiling of proteases: tools for granzyme degradomics, Expert Rev Proteomics, 7, 347, 10.1586/epr.10.24 Saxena, 2012, Proteomic analysis of zebrafish caudal fin regeneration, Mol Cell Proteomics, 1 Pizzi, 2007, Matrix metalloproteinases and proteoglycans in axonal regeneration, Exp Neurol, 204, 496, 10.1016/j.expneurol.2006.12.012 Page-McCaw, 2008, Remodeling the model organism: matrix metalloproteinase functions in invertebrates, Semin Cell Dev Biol, 19, 14, 10.1016/j.semcdb.2007.06.004 Quiñones, 2002, Extracellular matrix remodeling and metalloproteinase involvement during intestine regeneration in the sea cucumber Holothuria glaberrima, Dev Biol, 250, 181, 10.1006/dbio.2002.0778 Gitler, 1998, Real time imaging of calcium-induced localized proteolytic activity after axotomy and its relation to growth cone formation, Neuron, 20, 1123, 10.1016/S0896-6273(00)80494-8 Perlson, 2004, Differential proteomics reveals multiple components in retrogradely transported axoplasm after nerve injury, Mol Cell Proteomics, 3, 510, 10.1074/mcp.M400004-MCP200 Perlson, 2005, Vimentin-dependent spatial translocation of an activated MAP kinase in injured nerve, Neuron, 45, 715, 10.1016/j.neuron.2005.01.023 Perlson, 2006, Vimentin binding to phosphorylated Erk sterically hinders enzymatic dephosphorylation of the kinase, J Mol Biol, 364, 938, 10.1016/j.jmb.2006.09.056 Glickman, 2002, The ubiquitin–proteasome proteolytic pathway: destruction for the sake of construction, Physiol Rev, 82, 373, 10.1152/physrev.00027.2001 Kaang, 2012, Synaptic protein degradation in memory reorganization, Adv Exp Med Biol, 970, 221, 10.1007/978-3-7091-0932-8_10 Hegde, 1809, Role of ubiquitin–proteasome-mediated proteolysis in nervous system disease, Biochim Biophys Acta, 2011, 128 Upadhya, 2007, Role of the ubiquitin proteasome system in Alzheimer's disease, BMC Biochem, 8, S12, 10.1186/1471-2091-8-S1-S12 Klimaschewski, 2007, Ubiquitination and proteasomal protein degradation in neurons, 653 Verma, 2005, Axonal protein synthesis and degradation are necessary for efficient growth cone regeneration, J Neurosci, 25, 331, 10.1523/JNEUROSCI.3073-04.2005 Savedia, 1994, Increased production of ubiquitin mRNA in motor neurons after axotomy, Neuropathol Appl Neurobiol, 20, 577, 10.1111/j.1365-2990.1994.tb01012.x Butt, 2006, Pre-extraction sample handling by automated frozen disruption significantly improves subsequent proteomic analyses, J Proteome Res, 5, 437, 10.1021/pr0503634 Neuhoff, 1988, Improved staining of 500 proteins in polyacrylamide gels including isoelectric focusing 501 gels with clear background at nanogram sensitivity using 502 coomassie brilliant blue G-250 and R-250, Electrophoresis, 9, 255, 10.1002/elps.1150090603 Franco, 2011, Exploring the proteome of an echinoderm nervous system: 2-DE of the sea star radial nerve cord and the synaptosomal membranes subproteome, Proteomics, 11, 1359, 10.1002/pmic.201000541 Lietzén, 2010, Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon, J Proteome Res, 9, 6795, 10.1021/pr100824w Franco, 2011, Proteome characterization of sea star coelomocytes — the innate immune effector cells of echinoderms, Proteomics, 11, 3587, 10.1002/pmic.201000745 Moss, 1998, Philos Trans R Soc Lond B Biol Sci, 353, 421, 10.1098/rstb.1998.0220 Hernroth, 2010, Possibility of mixed progenitor cells in sea star arm regeneration, J Exp Zool B Mol Dev Evol, 314, 457, 10.1002/jez.b.21352 Mladenov, 1989, Roux's Arch Dev Biol, 198, 19, 10.1007/BF00376366 Fan, 2011, J Ocean Univ Chin, 10, 255, 10.1007/s11802-011-1837-y Thorndyke, 2001, Microsc Res Tech, 55, 474, 10.1002/jemt.1192 Jiménez, 2005, Proteomics of the injured rat sciatic nerve reveals protein expression dynamics during regeneration, Mol Cell Proteomics, 4, 120, 10.1074/mcp.M400076-MCP200 Tai, 2008, Ubiquitin, the proteasome and protein degradation in neuronal function and dysfunction, Nat Rev Neurosci, 9, 826, 10.1038/nrn2499 Ambron, 1996, Priming events and retrograde injury signals. A new perspective on the cellular and molecular biology of nerve regeneration, Mol Neurobiol, 13, 61, 10.1007/BF02740752 Lowery, 2009, The trip of the tip: understanding the growth cone machinery, Nat Rev Mol Cell Biol, 10, 332, 10.1038/nrm2679 Stiess, 2011, Neuronal polarization: the cytoskeleton leads the way, Dev Neurobiol, 71, 430, 10.1002/dneu.20849 Hall, 2010, Rho and Ras GTPases in axon growth, guidance, and branching, Cold Spring Harb Perspect Biol, 2, a001818, 10.1101/cshperspect.a001818 Takenawa, 2001, WASP and WAVE family proteins: key molecules for rapid rearrangement of cortical actin filaments and cell movement, J Cell Sci, 114, 1801, 10.1242/jcs.114.10.1801 Nobes, 1995, Rho, rac, and cdc42 GTPases regulate the assembly of multimolecular focal complexes associated with actin stress fibers, lamellipodia, and filopodia, Cell, 81, 53, 10.1016/0092-8674(95)90370-4 Garvalov, 2007, Cdc42 regulates cofilin during the establishment of neuronal polarity, J Neurosci, 27, 13117, 10.1523/JNEUROSCI.3322-07.2007 Kouchi, 2011, Phospholipase Cdelta3 regulates RhoA/Rho kinase signaling and neurite outgrowth, J Biol Chem, 286, 8459, 10.1074/jbc.M110.171223 Wang, 2003, Regulation of cell polarity and protrusion formation by targeting RhoA for degradation, Science, 302, 1775, 10.1126/science.1090772 Kim, 2001, Calmodulin and profilin coregulate axon outgrowth in Drosophila, J Neurobiol, 47, 26, 10.1002/neu.1013 McCallum, 1996, Identification of a putative effector for Cdc42Hs with high sequence similarity to the RasGAP-related protein IQGAP1 and a Cdc42Hs binding partner with similarity to IQGAP2, J Biol Chem, 271, 21732, 10.1074/jbc.271.36.21732 Autieri, 2003, AIF-1 is an actin-polymerizing and Rac1-activating protein that promotes vascular smooth muscle cell migration, Circ Res, 92, 1107, 10.1161/01.RES.0000074000.03562.CC Bennett, 2001, Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues, Physiol Rev, 81, 1353, 10.1152/physrev.2001.81.3.1353 Holleran, 2001, beta III spectrin binds to the Arp1 subunit of dynactin, J Biol Chem, 276, 36598, 10.1074/jbc.M104838200 Erez, 2007, Formation of microtubule-based traps controls the sorting and concentration of vesicles to restricted sites of regenerating neurons after axotomy, J Cell Biol, 176, 497, 10.1083/jcb.200607098 Lewcock, 2007, The ubiquitin ligase Phr1 regulates axon outgrowth through modulation of microtubule dynamics, Neuron, 56, 604, 10.1016/j.neuron.2007.09.009 Kono, 2012, Proteasomal degradation resolves competition between cell polarization and cellular wound healing, Cell, 150, 1, 10.1016/j.cell.2012.05.030 Reyes-Turcu, 2009, Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes, Annu Rev Biochem, 78, 363, 10.1146/annurev.biochem.78.082307.091526 Glogowska, 2008, The cytoplasmic domain of proEGF negatively regulates motility and elastinolytic activity in thyroid carcinoma cells1, Neoplasia, 10, 1120, 10.1593/neo.08580 Morihara, 1999, Distribution of synaptosomal-associated protein 25 in nerve growth cones and reduction of neurite outgrowth by botulinum neurotoxin A without altering growth cone morphology in dorsal root ganglion neurons and PC-12 cells, Neuroscience, 91, 695, 10.1016/S0306-4522(98)00671-X Tessier-Lavigne, 1996, The molecular biology of axon guidance, Science, 274, 1123, 10.1126/science.274.5290.1123 Brose, 1999, Slit proteins bind Robo receptors and have an evolutionarily conserved role in repulsive axon guidance, Cell, 96, 795, 10.1016/S0092-8674(00)80590-5 Battye, 1999, Axon repulsion from the midline of the Drosophila CNS requires slit function, Development, 126, 2475, 10.1242/dev.126.11.2475 Quinn, 1999, A family of proteins implicated in axon guidance and outgrowth, J Neurobiol, 41, 158, 10.1002/(SICI)1097-4695(199910)41:1<158::AID-NEU19>3.0.CO;2-0 Oliver, 1999, ERp57 functions as a subunit of specific complexes formed with the ER lectins calreticulin and calnexin, Mol Biol Cell, 10, 2573, 10.1091/mbc.10.8.2573 Jascur, 2005, Regulation of p21(WAF1/CIP1) stability by WISp39, a Hsp90 binding TPR protein, Mol Cell, 17, 237, 10.1016/j.molcel.2004.11.049 Abe, 2008, Nerve injury signaling, Curr Opin Neurobiol, 18, 276, 10.1016/j.conb.2008.06.005 Chen, 2010, Molecular cloning of chicken Cecr2 and its expression during chicken embryo development, Int J Dev Biol, 54, 925, 10.1387/ijdb.092933jc Tanabe, 2003, Fibroblast growth factor-inducible-14 is induced in axotomized neurons and promotes neurite outgrowth, J Neurosci, 23, 9675, 10.1523/JNEUROSCI.23-29-09675.2003 Ciani, 2005, WNTs in the vertebrate nervous system: from patterning to neuronal connectivity, Nat Rev Neurosci, 6, 351, 10.1038/nrn1665 Arimura, 2007, Neuronal polarity: from extracellular signals to intracellular mechanisms, Nat Rev Neurosci, 8, 194, 10.1038/nrn2056 Santarius, 2006, Supervised membrane swimming: small G-protein lifeguards regulate PIPK signalling and monitor intracellular PtdIns(4,5)P2 pools, Biochem J, 398, 1, 10.1042/BJ20060565 Liu, 2011, Neuronal intrinsic mechanisms of axon regeneration, Annu Rev Neurosci, 34, 131, 10.1146/annurev-neuro-061010-113723 Murabe, 2008, Neural architecture of the brachiolaria larva of the starfish, Asterina pectinifera, J Comp Neurol, 509, 271, 10.1002/cne.21742 Regan, 2002, Ferritin induction protects cortical astrocytes from heme-mediated oxidative injury, Neuroscience, 113, 985, 10.1016/S0306-4522(02)00243-9 Mi, 2005, The slow Wallerian degeneration gene, WldS, inhibits axonal spheroid pathology in gracile axonal dystrophy mice, Brain, 128, 405, 10.1093/brain/awh368 Kubo, 2002, Analysis of genes induced in peripheral nerve after axotomy using cDNA microarrays, J Neurochem, 82, 1129, 10.1046/j.1471-4159.2002.01060.x Doucet, 2008, Metadegradomics: toward in vivo quantitative degradomics of proteolytic post-translational modifications of the cancer proteome, Mol Cell Proteomics, 7, 1925, 10.1074/mcp.R800012-MCP200 Niessen, 2011, Proteomic analysis of the coagulation reaction in plasma and whole blood using PROTOMAP, Proteomics, 11, 2377, 10.1002/pmic.201000674 Giniger, 2002, How do Rho family GTPases direct axon growth and guidance? A proposal relating signaling pathways to growth cone mechanics, Differ Res Biol Divers, 70, 385, 10.1046/j.1432-0436.2002.700801.x Kozma, 1997, Rho family GTPases and neuronal growth cone remodelling: relationship between increased complexity induced by Cdc42Hs, Rac1, and acetylcholine and collapse induced by RhoA and lysophosphatidic acid, Mol Cell Biol, 17, 1201, 10.1128/MCB.17.3.1201 Andersen, 2005, The search and prime hypothesis for growth cone turning, Bioessays, 27, 86, 10.1002/bies.20154 Rajnicek, 2006, Growth cone steering by a physiological electric field requires dynamic microtubules, microfilaments and Rac-mediated filopodial asymmetry, J Cell Sci, 119, 1736, 10.1242/jcs.02897