Prokaryotic expression of goldfish Tgf2 transposase with optimal codons and its enzyme activity

Aquaculture and Fisheries - Tập 4 - Trang 98-104 - 2019
Xi Zhao1, Ruirui Si1, Mingjuan He1, Xiayun Jiang1,2, Shuming Zou2
1College of Food Science and Technology, Shanghai Ocean University, Shanghai, 201306, China
2Genetics and Breeding Center for Blunt Snout Bream, Key Laboratory of Freshwater Aquatic Genetic Resources, National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai, 201306, China

Tài liệu tham khảo

Abe, 2011, Tol2-mediated transgenesis, gene trapping, enhancer trapping, and the Gal4-UAS system, Methods in Cell Biology, 104, 23, 10.1016/B978-0-12-374814-0.00002-1 Arensburger, 2001, Phylogenetic and functional characterization of the hAT transposon superfamily, Genetics, 188, 45, 10.1534/genetics.111.126813 Atikinson, 2015, 1 Benjak, 2008, Genome-wide analysis of the ‘‘Cut-and-Paste’’Transposons of grapevine, PLoS One, 3, 1, 10.1371/journal.pone.0003107 Calvi, 1991, Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: Hobo, activator, and Tam3, Cell, 66, 465, 10.1016/0092-8674(81)90010-6 Carpentier, 2011, Transposase-transposase interactions in MOS1 complexes: A biochemicalapproach, Journal of Molecular Biology, 405, 892, 10.1016/j.jmb.2010.11.032 Cheng, 2014, The goldfish hAT-family transposon Tgf2 is capable of autonomous excision in zebrafish embryos, Gene, 536, 74, 10.1016/j.gene.2013.11.084 Chen, 2008, Molecular characterization of the first intact Transib transposon from Helicoverpa zea, Gene, 408, 51, 10.1016/j.gene.2007.10.015 Delauriere, 2009, DNA binding specificity and cleavage activity of pacmmar transposase, Biochemistry, 48, 7279, 10.1021/bi900609v Feschotte, 2004, Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences, Molecular Biology and Evolution, 21, 1769, 10.1093/molbev/msh188 Feschotte, 2005, DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEs, Nucleic Acids Research, 33, 2153, 10.1093/nar/gki509 Feschotte, 2007, DNA transposons and the evolution of eukaryotic genomes, NIH Public Access, 41, 331 Grzebelus, 2006, Master: A novel family of PIF/Harbinger-like transposable elements identified in carrot (Daucus carota L.), Molecular Genetics and Genomics, 275, 450, 10.1007/s00438-006-0102-3 Hickman, 2014, Structural basis of hAT transposon end recognition by Hermes, an Octameric DNA transposase from Musca domestica, Cell, 158, 353, 10.1016/j.cell.2014.05.037 Hickman, 2005, Molecular architecture of a eukaryotic DNA transposase, Nature Structure & Molecular Biology, 12, 715, 10.1038/nsmb970 Hua-Van, 2008, Analysis of the DDE motif in the Mutator superfamily, Journal of Molecular Evolution, 67, 670, 10.1007/s00239-008-9178-1 Ivics, 1997, Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells, Cell, 91, 501, 10.1016/S0092-8674(00)80436-5 Janicki, 2011, Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes, Chromosome Research, 19, 787, 10.1007/s10577-011-9230-7 Jiang, 2012, Goldfish transposase Tgf2 presumably from recent horizontal transfer is active, FASEB Jouanal, 26, 2743, 10.1096/fj.11-199273 Jiang, 2016, The N-terminal zinc finger domain of Tgf2 transposase contributes to DNA binding and to transposition activity, Scientific Reports, 6, 27101, 10.1038/srep27101 Kawakami, 2000, Identification of a functional transposase of the Tol2 element, an AC-like element from the Japanese medaka fish, and its transposition in the zebrafish germ lineage, Genetics, 97, 11403 Kempken, 2001, The hAT family: A versatile transposon group common to plants, fungi, animals, and man, Chromosoma, 110, 1, 10.1007/s004120000118 Liao, 2002, Protective mechanism of stabilizing excipients against dehydration in the freeze-drying of proteins, Pharmaceutical Research, 19, 1854, 10.1023/A:1021497625645 Liu, 2016, Expression and activity determination of codon optimized Antheraea pernyi lysozyme in Pichia pastoris, Microbiology China, 43, 292 Masek, 2005, Denaturing RNA electrophoresis in TAE agarose gels, Analytical Biochemistry, 336, 46, 10.1016/j.ab.2004.09.010 Michel, 2003, The C-terminus of the Hermes transposase contains a protein multimerization domain, Insect Biochemistry and Molecular Biology, 33, 959, 10.1016/S0965-1748(03)00102-4 Panaud, 2016, Horizontal transfers of transposable elements in eukaryotes: The flying genes, Comptes Rendus Biologies, 339, 296, 10.1016/j.crvi.2016.04.013 Qu, 2005, Efficient and sensitive method of DNA silver staining in polyacrylamide gels, Electrophoresis, 26, 99, 10.1002/elps.200406177 Rad, 2010, PiggyBac transposon mutagenesis: A tool for cancer gene discovery in mice, Science, 330, 1104, 10.1126/science.1193004 Rubin, 2001, Structure and evolution of the hAT transposon superfamily, Genetics, 158, 949, 10.1093/genetics/158.3.949 Shibano, 2007, Recombinant Tol2 transposase with activity in Xenopus embryos, FEBS Letters, 581, 4333, 10.1016/j.febslet.2007.08.004 Si, 2017, Prokaryotic expression of goldfish Tgf2 transposase and its DNA binding activity, Journal of ShangHai Ocean University, 26, 340 Tafalla, 2006, Fish transposons and their potential use in aquaculture, Journal of Biotechnology, 123, 397, 10.1016/j.jbiotec.2005.12.019 Xu, 2015, Prokaryotic expression and purification of soluble goldfish Tgf2 transposase with transposition activity, Molecular Biotechnology, 57, 94, 10.1007/s12033-014-9805-6 Yant, 2004, Mutational analysis of the N-terminal DNA-binding domain of sleeping beauty transposase: Critical residues for DNA binding and hyperactivity in mammalian cells, Molecular and Cellular Biology, 24, 9239, 10.1128/MCB.24.20.9239-9247.2004 Zabala, 2005, The wp mutation of Glycine max carries a gene-fragment-rich transposon of the CACTA superfamily, The Plant Cell Online, 17, 2619, 10.1105/tpc.105.033506 Zhang, 2001, DNA-binding activity and subunit interaction of the mariner transposase, Nucleic Acids Research, 29, 3566, 10.1093/nar/29.17.3566 Zhao, 2000, Synonymous codon usage in Pichia pastoris, Chinese Journal of Biotechnology, 16, 308 Zhou, 2002, An improved Coomassie brilliant blue (CBB-R 250) staining to proteins in gels, Nuclear Science and Techniques, 13, 252 Zou, 2010, Cloning of goldfish hAT transposon Tgf2 and its structure, Hereditas, 32, 1263