Progress and perspective on cyanobacterial glycogen metabolism engineering
Tài liệu tham khảo
Abernathy, 2017, Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis, Biotechnol. Biofuels., 10, 273, 10.1186/s13068-017-0958-y
Abramson, 2018, Redirecting carbon to bioproduction via a growth arrest switch in a sucrose-secreting cyanobacterium, Algal. Res., 33, 248, 10.1016/j.algal.2018.05.013
Aikawa, 2014, Glycogen production for biofuels by the euryhaline cyanobacteria Synechococcus sp. strain PCC 7002 from an oceanic environment, Biotechnol. Biofuels., 7, 88, 10.1186/1754-6834-7-88
Alonso-Casajus, 2006, Glycogen phosphorylase, the product of the glgP Gene, catalyzes glycogen breakdown by removing glucose units from the nonreducing ends in Escherichia coli, J. Bacteriol., 188, 5266, 10.1128/JB.01566-05
Angermayr, 2009, Energy biotechnology with cyanobacteria, Curr. Opin. Biotechnol., 20, 257, 10.1016/j.copbio.2009.05.011
Angermayr, 2012, Engineering a cyanobacterial cell factory for production of lactic acid, Appl. Environ. Microbiol., 78, 7098, 10.1128/AEM.01587-12
Atsumi, 2009, Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde, Nat. Biotechnol., 27, 1177, 10.1038/nbt.1586
Bahaji, 2011, Plant Cell Physiol., 52, 1162, 10.1093/pcp/pcr067
Ball, 2003, From bacterial glycogen to starch: understanding the biogenesis of the plant starch granule, Annu. Rev. Plant Biol., 54, 207, 10.1146/annurev.arplant.54.031902.134927
Benson, 2016, Factors Altering Pyruvate Excretion in a Glycogen Storage Mutant of the Cyanobacterium, Synechococcus PCC7942, Front. Microbiol., 7, 475, 10.3389/fmicb.2016.00475
Cano, 2018, Glycogen Synthesis and Metabolite Overflow Contribute to Energy Balancing in Cyanobacteria, Cell Rep., 23, 667, 10.1016/j.celrep.2018.03.083
Carrieri, 2012, Photo-catalytic conversion of carbon dioxide to organic acids by a recombinant cyanobacterium incapable of glycogen storage, Energy Environ. Sci., 5, 9457, 10.1039/c2ee23181f
Carrieri, 2015, Enhancing photo-catalytic production of organic acids in the cyanobacterium Synechocystis sp. PCC 6803 Delta glgC, a strain incapable of glycogen storage, Microb. Biotechnol., 8, 275, 10.1111/1751-7915.12243
Chwa, 2016, Engineering of a modular and synthetic phosphoketolase pathway for photosynthetic production of acetone from CO2 in Synechococcus elongatus PCC 7942 under light and aerobic condition, Plant Biotechnol. J., 14, 1768, 10.1111/pbi.12536
Cumino, 2010, The proteins involved in sucrose synthesis in the marine cyanobacterium Synechococcus sp. PCC 7002 are encoded by two genes transcribed from a gene cluster, FEBS Lett., 584, 4655, 10.1016/j.febslet.2010.10.040
Curatti, 2008, Sucrose synthase is involved in the conversion of sucrose to polysaccharides in filamentous nitrogen-fixing cyanobacteria, Planta, 228, 617, 10.1007/s00425-008-0764-7
Damrow, 2016, The Multiple Functions of Common Microbial Carbon Polymers, Glycogen and PHB, during Stress Responses in the Non-Diazotrophic Cyanobacterium Synechocystis sp. PCC 6803, Front. Microbiol., 7, 966, 10.3389/fmicb.2016.00966
David, 2018, Production of 1,2-propanediol in photoautotrophic Synechocystis is linked to glycogen turn-over, Biotechnol. Bioeng., 115, 300, 10.1002/bit.26468
Davies, 2014, Engineering limonene and bisabolene production in wild type and a glycogen-deficient mutant of Synechococcus sp. PCC 7002, Front. Bioeng. Biotechnol., 2, 21, 10.3389/fbioe.2014.00021
Deng, 1999, Ethanol synthesis by genetic engineering in cyanobacteria, Appl. Environ. Microbiol., 65, 523, 10.1128/AEM.65.2.523-528.1999
Duan, 2016, Sucrose secreted by the engineered cyanobacterium and its fermentability, J. Ocean U China, 15, 890, 10.1007/s11802-016-3007-8
Ducat, 2012, Rerouting carbon flux to enhance photosynthetic productivity, Appl. Environ. Microbiol., 78, 2660, 10.1128/AEM.07901-11
Eydallin, 2007, An Escherichia coli mutant producing a truncated inactive form of GlgC synthesizes glycogen: Further evidences for the occurrence of various important sources of ADPglucose in enterobacteria, FEBS Lett., 581, 4417, 10.1016/j.febslet.2007.08.016
Flombaum, 2013, Present and future global distributions of the marine cyanobacteria Prochlorococcus and Synechococcus, P. Natl. Acad. Sci. USA, 110, 9824, 10.1073/pnas.1307701110
Fu, 2006, The functional divergence of two glgP homologues in Synechocystis sp. PCC 6803, FEMS Microbiol. Lett., 260, 201, 10.1111/j.1574-6968.2006.00312.x
Gao, 2012, Photosynthetic production of ethanol from carbon dioxide in genetically engineered cyanobacteria, Energy Environ. Sci., 5, 9857, 10.1039/C2EE22675H
Gelders, 2005, Potato phosphorylase catalyzed synthesis of amylose-lipid complexes, Biomacromolecules, 6, 2622, 10.1021/bm0502011
Georg, 2014, The small regulatory RNA SyR1/PsrR1 controls photosynthetic functions in cyanobacteria, Plant Cell, 26, 3661, 10.1105/tpc.114.129767
Grundel, 2012, Impaired glycogen synthesis causes metabolic overflow reactions and affects stress responses in the cyanobacterium Synechocystis sp PCC 6803, Microbiol-Sgm, 158, 3032, 10.1099/mic.0.062950-0
Guerra, 2013, Natural osmolytes are much less effective substrates than glycogen for catabolic energy production in the marine cyanobacterium Synechococcus sp strain PCC 7002, J. Biotechnol., 166, 65, 10.1016/j.jbiotec.2013.04.005
Hanai, 2014, The effects of dark incubation on cellular metabolism of the wild type cyanobacterium synechocystis sp. PCC 6803 and a mutant lacking the transcriptional regulator cyAbrB2, Life, 4, 770, 10.3390/life4040770
Hendry, 2017, Rerouting of carbon flux in a glycogen mutant of cyanobacteria assessed via isotopically non-stationary 13 C metabolic flux analysis, Biotechnol. Bioeng., 114, 2298, 10.1002/bit.26350
Hendry, 2018, Genome-scale fluxome of Synechococcus elongatus UTEX 2973 using transient 13C-labeling data, Plant Physiol., 179, 761, 10.1104/pp.18.01357
Hickman, 2013, Glycogen synthesis is a required component of the nitrogen stress response in Synechococcus elongatus PCC 7942, Algal Res., 2, 98, 10.1016/j.algal.2013.01.008
Huang, 2016, CRISPR interference (CRISPRi) for gene regulation and succinate production in cyanobacterium S-elongatus PCC 7942, Microb. Cell Factories, 15, 10.1186/s12934-016-0595-3
Iglesias, 1991, Regulatory and structural-properties of the cyanobacterial ADPglucose pyrophosphorylases, Plant Physiol., 97, 1187, 10.1104/pp.97.3.1187
Iijima, 2014, rre37 Overexpression alters gene expression related to the tricarboxylic acid cycle and pyruvate metabolism in Synechocystis sp. PCC 6803, Sci. World J., 2014, 921976, 10.1155/2014/921976
Iijima, 2015, Seawater cultivation of freshwater cyanobacterium Synechocystis sp PCC 6803 drastically alters amino acid composition and glycogen metabolism, Front. Microbiol., 6, 326, 10.3389/fmicb.2015.00326
Jackson, 2015, Dynamics of photosynthesis in a glycogen-deficient glgC mutant of Synechococcus sp. strain PCC 7002, Appl. Environ. Microbiol., 81, 6210, 10.1128/AEM.01751-15
Jacobsen, 2014, Engineering of photosynthetic mannitol biosynthesis from CO2 in a cyanobacterium, Metab. Eng., 21, 60, 10.1016/j.ymben.2013.11.004
Jacobsen, 2011, One-step plasmid construction for generation of knock-out mutants in cyanobacteria: studies of glycogen metabolism in Synechococcus sp. PCC 7002, Photosynth. Res., 107, 215, 10.1007/s11120-010-9613-1
Jeanjean, 1993, Exposure of the Cyanobacterium Synechocystis Pcc6803 to Salt Stress Induces Concerted Changes in Respiration and Photosynthesis, Plant Cell Physiol., 34, 1073
Jiang, 2015, The feasibility of using complex wastewater from a monosodium glutamate factory to cultivate Spirulina subsalsa and accumulate biochemical composition, Bioresour. Technol., 180, 304, 10.1016/j.biortech.2015.01.019
Jin, 2014, Engineering biofuel tolerance in non-native producing microorganisms, Biotechnol. Adv., 32, 541, 10.1016/j.biotechadv.2014.02.001
Joseph, 2014, Increased biomass production and glycogen accumulation in apcE gene deleted Synechocystis sp PCC 6803, AMB Express, 4, 17, 10.1186/s13568-014-0017-z
Kaniya, 2013, Deletion of the transcriptional regulator cyAbrB2 deregulates primary carbon metabolism in Synechocystis sp. PCC 6803, Plant Physiol., 162, 1153, 10.1104/pp.113.218784
Lee, 1973, Sweet corn phosphorylase: purification and properties, Arch. Biochem. Biophys., 156, 276, 10.1016/0003-9861(73)90366-4
Lerner, 2009, Glycogen phosphorylase is involved in stress endurance and biofilm formation in Azospirillum brasilense Sp7, FEMS Microbiol. Lett., 300, 75, 10.1111/j.1574-6968.2009.01773.x
Levi, 1976, Regulatory properties of the ADP-Glucose pyrophosphorylase of the blue-green bacterium Synechococcus 6301, Plant Physiol., 58, 753, 10.1104/pp.58.6.753
Li, 2014, Isobutanol production as an alternative metabolic sink to rescue the growth deficiency of the glycogen mutant of Synechococcus elongatus PCC 7942, Photosynth. Res., 120, 301, 10.1007/s11120-014-9987-6
Li, 2016, CRISPR-Cas9 for the genome engineering of cyanobacteria and succinate production, Metab. Eng., 38, 293, 10.1016/j.ymben.2016.09.006
Linder, 1976, 1, 4-alpha-Glucan phosphorylase from Klebsiella pneumoniae purification, subunit structure and amino acid composition, Eur. J. Biochem., 70, 291, 10.1111/j.1432-1033.1976.tb10981.x
Lou, 2018, A specific single nucleotide polymorphism in the ATP synthase gene significantly improves environmental stress tolerance of Synechococcus elongatus PCC 7942, Appl. Environ. Microbiol., 84
Lu, 2010, A perspective: photosynthetic production of fatty acid-based biofuels in genetically engineered cyanobacteria, Biotechnol. Adv., 28, 742, 10.1016/j.biotechadv.2010.05.021
Lu, 2006, The role of cytosolic alpha-glucan phosphorylase in maltose metabolism and the comparison of amylomaltase in Arabidopsis and Escherichia coli, Plant Physiol., 142, 878, 10.1104/pp.106.086850
Luan, 2018, Tailoring cyanobacterial cell factory for improved industrial properties, Biotechnol. Adv., 36, 430, 10.1016/j.biotechadv.2018.01.005
Martin, 1997, A glgC gene essential only for the first of two spatially distinct phases of glycogen synthesis in Streptomyces coelicolor A3(2), J. Bacteriol., 179, 7784, 10.1128/jb.179.24.7784-7789.1997
Matson, 2017, Photomixotrophic chemical production in cyanobacteria, Curr. Opin. Biotechnol., 50, 65, 10.1016/j.copbio.2017.11.008
McEwen, 2013, Engineering Synechococcus elongatus PCC 7942 for continuous growth under diurnal conditions, Appl. Environ. Microbiol., 79, 1668, 10.1128/AEM.03326-12
Miao, 2003, Sucrose accumulation in salt-stressed cells of agp gene deletion-mutant in cyanobacterium Synechocystis sp PCC 6803, FEMS Microbiol. Lett., 218, 71, 10.1111/j.1574-6968.2003.tb11500.x
Miao, 2003, Changes in photosynthesis and pigmentation in an agp deletion mutant of the cyanobacterium Synechocystis sp, Biotechnol. Lett., 25, 391, 10.1023/A:1022446330284
Mo, 2017, Effects of global transcription factor NtcA on photosynthetic production of ethylene in recombinant Synechocystis sp. PCC 6803, Biotechnol. Biofuels., 10, 145, 10.1186/s13068-017-0832-y
Moran-Zorzano, 2007, Occurrence of more than one important source of ADPglucose linked to glycogen biosynthesis in Escherichia coli and Salmonella, FEBS Lett., 581, 4423, 10.1016/j.febslet.2007.08.017
Nakamoto, 2014, Physical Interaction between Bacterial Heat Shock Protein (Hsp) 90 and Hsp70 Chaperones Mediates Their Cooperative Action to Refold Denatured Proteins, J. Biol. Chem., 289, 6110, 10.1074/jbc.M113.524801
Nakamura, 2005, Some cyanobacteria synthesize semi-amylopectin type alpha-polyglucans instead of glycogen, Plant Cell Physiol., 46, 539, 10.1093/pcp/pci045
Namakoshi, 2016, Combinatorial deletions of glgC and phaCE enhance ethanol production in Synechocystis sp. PCC 6803, J. Biotechnol., 239, 13, 10.1016/j.jbiotec.2016.09.016
Oliver, 2014, Metabolic design for cyanobacterial chemical synthesis, Photosynth. Res., 120, 249, 10.1007/s11120-014-9997-4
Oliver, 2015, A carbon sink pathway increases carbon productivity in cyanobacteria, Metab. Eng., 29, 106, 10.1016/j.ymben.2015.03.006
Qiao, 2018, Effects of reduced and enhanced glycogen pools on salt-induced sucrose production in a sucrose-secreting strain of Synechococcus elongatus PCC 7942, Appl. Environ. Microbiol., 84, 10.1128/AEM.02023-17
Robson, 1974, Mobilization of granulose in Clostridium pasteurianum. Purification and properties of granulose phosphorylase, Biochem. J., 144, 513, 10.1042/bj1440513
Rousseaux, 2014, Interannual variation in phytoplankton primary production at a global scale, Remote Sens-Basel, 6, 1
Sengupta, 2018, Recent advances in synthetic biology of cyanobacteria, Appl. Microbiol. Biotechnol., 102, 5457, 10.1007/s00253-018-9046-x
Serrano, 2001, Ion homeostasis during salt stress in plants, Curr. Opin. Cell Biol., 13, 399, 10.1016/S0955-0674(00)00227-1
Shabestary, 2018, Targeted repression of essential genes to arrest growth and increase carbon partitioning and biofuel titers in cyanobacteria, ACS Synth. Biol., 7, 1669, 10.1021/acssynbio.8b00056
Shimakawa, 2014, Respiration accumulates Calvin cycle intermediates for the rapid start of photosynthesis in Synechocystis sp. PCC 6803, Biosci. Biotechnol. Biochem., 78, 1997, 10.1080/09168451.2014.943648
Shimmori, 2018, Transcriptional activation of glycogen catabolism and oxidative pentose phosphate pathway by NrrA facilitates cell survival under nitrogen starvation in the cyanobacterium Synechococcus sp. strain PCC 7002, Plant Cell Physiol., 59, 1225, 10.1093/pcp/pcy059
Song, 2016, The potential of Synechococcus elongatus UTEX 2973 for sugar feedstock production, Appl. Microbiol. Biotechnol., 100, 7865, 10.1007/s00253-016-7510-z
Stal, 1997, Fermentation in cyanobacteria, FEMS Microbiol. Rev., 21, 179, 10.1016/S0168-6445(97)00056-9
Sun, 2018, Toolboxes for cyanobacteria: Recent advances and future direction, Biotechnol. Adv., 36, 1293, 10.1016/j.biotechadv.2018.04.007
Sun, 2018, Re-direction of carbon flux to key precursor malonyl-CoA via artificial small RNAs in photosynthetic Synechocystis sp PCC 6803, Biotechnol. Biofuels., 11, 10.1186/s13068-018-1032-0
Suzuki, 2010, Carbohydrate metabolism in mutants of the cyanobacterium Synechococcus elongatus PCC 7942 fefective in glycogen synthesis, Appl. Environ. Microbiol., 76, 3153, 10.1128/AEM.00397-08
Tan, 2018, The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973, Biotechnol. Biofuels., 11, 218, 10.1186/s13068-018-1215-8
Ueno, 2017, Applying a riboregulator as a new chromosomal gene regulation tool for higher glycogen production in Synechocystis sp PCC 6803, Appl. Microbiol. Biotechnol., 101, 8465, 10.1007/s00253-017-8570-4
Ungerer, 2018, Adjustments to photosystem stoichiometry and electron transfer proteins are key to the remarkably fast growth of the cyanobacterium Synechococcus elongatus UTEX 2973, MBio, 9, 10.1128/mBio.02327-17
van der Woude, 2014, Carbon sink removal: Increased photosynthetic production of lactic acid by Synechocystis sp. PCC6803 in a glycogen storage mutant, J. Biotechnol., 184, 100, 10.1016/j.jbiotec.2014.04.029
Veetil, 2017, Ethylene production with engineered Synechocystis sp PCC 6803 strains, Microb. Cell Factories, 16, 34, 10.1186/s12934-017-0645-5
Waditee, 2002, Overexpression of a Na+/H+ antiporter confers salt tolerance on a freshwater cyanobacterium, making it capable of growth in sea water, Proc. Natl. Acad. Sci. U. S. A., 99, 4109, 10.1073/pnas.052576899
Waterbury, 1979, Widespread occurrence of a unicellular, marine, planktonic, cyanobacterium, Nature, 277, 293, 10.1038/277293a0
Work, 2015, Lauric acid production in a glycogen-less strain of Synechococcus sp. PCC 7002, Front. Bioeng. Biotechnol., 3, 48, 10.3389/fbioe.2015.00048
Xiong, 2017, The plasticity of cyanobacterial carbon metabolism, Curr. Opin. Chem. Biol., 41, 12, 10.1016/j.cbpa.2017.09.004
Xu, 2013, Altered carbohydrate metabolism in glycogen synthase mutants of Synechococcus sp strain PCC 7002: Cell factories for soluble sugars, Metab. Eng., 16, 56, 10.1016/j.ymben.2012.12.002
Xue, 2015, Cyanobacteria as Cell Factories to Produce Plant Secondary Metabolites, Front. Bioeng. Biotech., 3, 57, 10.3389/fbioe.2015.00057
Yao, 2016, Multiple gene repression in cyanobacteria using CRISPRi, ACS Synth. Biol., 5, 207, 10.1021/acssynbio.5b00264
Young, 2011, Mapping photoautotrophic metabolism with isotopically nonstationary C-13 flux analysis, Metab. Eng., 13, 656, 10.1016/j.ymben.2011.08.002
Yu, 2015, Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2, Sci. Rep., 5
Zea, 2004, General assay for sugar nucleotidyltransferases using electrospray ionization mass spectrometry, Anal. Biochem., 328, 196, 10.1016/j.ab.2004.01.019
Zhou, 2016, Introducing extra NADPH consumption ability significantly increases the photosynthetic efficiency and biomass production of cyanobacteria, Metab. Eng., 38, 217, 10.1016/j.ymben.2016.08.002
Zhou, 2016, From cyanochemicals to cyanofactories: a review and perspective, Microb. Cell Factories, 15, 2, 10.1186/s12934-015-0405-3
Zilliges, 2014