Principal trend analysis for time-course data with applications in genomic medicine
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Zou, H. and Hastie, T. (2005). Regularization and variable selection via the elastic net. <i>J. R. Stat. Soc. Ser. B Stat. Methodol.</i> <b>67</b> 301–320.
Zou, H., Hastie, T. and Tibshirani, R. (2006). Sparse principal component analysis. <i>J. Comput. Graph. Statist.</i> <b>15</b> 265–286.
Wahba, G. (1990). <i>Spline Models for Observational Data. CBMS-NSF Regional Conference Series in Applied Mathematics</i> <b>59</b>. SIAM, Philadelphia, PA.
Witten, D. M., Tibshirani, R. and Hastie, T. (2009). A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. <i>Biostatistics</i> <b>10</b> 515–534.
Li, C. and Wong, W. H. (2001). Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. <i>Proc. Natl. Acad. Sci. USA</i> <b>98</b> 31–36.
Hubbell, E., Liu, W.-M. and Mei, R. (2002). Robust estimators for expression analysis. <i>Bioinformatics</i> <b>18</b> 1585–1592.
Witten, D. M. and Tibshirani, R. J. (2009). Extensions of sparse canonical correlation analysis with applications to genomic data. <i>Stat. Appl. Genet. Mol. Biol.</i> <b>8</b> Art. 28, 29.
Tibshirani, R. (1996). Regression shrinkage and selection via the lasso. <i>J. R. Stat. Soc. Ser. B Stat. Methodol.</i> <b>58</b> 267–288.
Bläsing, O. E., Gibon, Y., Günther, M., Höhne, M., Morcuende, R., Osuna, D., Thimm, O., Usadel, B., Scheible, W. R. and Stitt, M. (2005). Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. <i>The Plant Cell Online</i> <b>17</b> 3257.
Breiman, L. and Spector, P. (1992). Submodel selection and evaluation in regression. The $x$-random case. <i>International Statistical Review</i> <b>60</b> 291–319.
Finnerty, C. C., Herndon, D. N., Przkora, R., Pereira, C. T., Oliveira, H. M., Queiroz, D. M. M., Rocha, A. M. C. and Jeschke, M. G. (2006). Cytokine expression profile over time in severely burned pediatric patients. <i>Shock</i> <b>26</b> 13–19.
Kimeldorf, G. S. and Wahba, G. (1970). A correspondence between Bayesian estimation on stochastic processes and smoothing by splines. <i>Ann. Math. Statist.</i> <b>41</b> 495–502.
Li, H. T., Su, Y. P., Cheng, T. M., Xu, J. M., Liao, J., Chen, J. C., Ji, C. Y., Ai, G. P. and Wang, J. P. (2010). The interaction between interferon-induced protein with tetratricopeptide repeats-1 and eukaryotic elongation factor-1A. <i>Molecular and Cellular Biochemistry</i> <b>337</b> 101–110.
Mairal, J., Bach, F., Ponce, J. and Sapiro, G. (2010). Online learning for matrix factorization and sparse coding. <i>J. Mach. Learn. Res.</i> <b>11</b> 19–60.
Zhang, Y. and Davis, R. (2013). Supplement to “Principal trend analysis for time-course data with applications in genomic medicine.” <a href="DOI:10.1214/13-AOAS659SUPP">DOI:10.1214/13-AOAS659SUPP</a>.
Zhang, Y., Tibshirani, R. J. and Davis, R. W. (2010). Predicting patient survival from longitudinal gene expression. <i>Stat. Appl. Genet. Mol. Biol.</i> <b>9</b> Art. 41, 23.
Zhang, Y., Tibshirani, R. and Davis, R. (2013). Classification of patients from time-course gene expression. <i>Biostatistics</i> <b>14</b> 87–98.
Zhong, H. H., Young, J. C., Pease, E. A., Hangarter, R. P. and McClung, C. R. (1994). Interactions between light and the circadian clock in the regulation of CAT2 expression in Arabidopsis. <i>Plant Physiology</i> <b>104</b> 889–898.
Hastie, T., Tibshirani, R. and Friedman, J. (2009). <i>The Elements of Statistical Learning</i>: <i>Data Mining</i>, <i>Inference</i>, <i>and Prediction</i>, 2nd ed. Springer, New York.
De Leeuw, J. and Michailidis, G. (1994). Block relaxation algorithms in statistics. In <i>Information Systems and Data Analysis</i> 308–325. Springer, Berlin.
Kohavi, R. (1995). A study of cross-validation and bootstrap for accuracy estimation and model selection. In <i>International Joint Conference on Artificial Intelligence</i>, <i>Vol.</i> 14 1137–1145. Lawrence Erlbaum Associates, Mahwah, NJ.
