Primers for mating-type diagnosis in Diaporthe and Phomopsis: their use in teleomorph induction in vitro and biological species definition

Fungal Biology - Tập 114 - Trang 255-270 - 2010
Jorge M. Santos1, Viviana G. Correia1, Alan J.L. Phillips1
1Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Quinta da Torre, 2829-516 Caparica, Portugal

Tài liệu tham khảo

Altschul, 1990, Basic local alignment search tool, Journal of Molecular Biology, 215, 403, 10.1016/S0022-2836(05)80360-2 Arie, 1997, Efficient cloning of ascomycete mating-type genes by PCR amplification of the conserved MAT HMG box, Fungal Genetics and Biology, 21, 118, 10.1006/fgbi.1997.0961 Arie, 2000, Mating type genes from asexual phytopathogenic ascomycetes Fusarium oxysporium and Alternaria alternata, Molecular Plant-Microbe Interactions, 13, 1330, 10.1094/MPMI.2000.13.12.1330 Brayford, 1990, Variation in Phomopsis isolates from Ulmus species in the British Isles and Italy, Mycological Research, 94, 691, 10.1016/S0953-7562(09)80670-9 Coppin, 1997, Mating types and sexual development in filamentous ascomycetes, Microbiology and Molecular Biology Reviews, 61, 411, 10.1128/.61.4.411-428.1997 Debuchy, 2006, Mating-type structure, evolution and function in Euascomycetes, 293 Du, 2005, Using mating-type gene sequences for improved phylogenetic resolution of Collectotrichum species complexes, Mycologia, 97, 641, 10.3852/mycologia.97.3.641 Dyer, 1992, The control of sexual morphogenesis in the Ascomycotina, Biological Reviews, 67, 421, 10.1111/j.1469-185X.1992.tb01189.x Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 6, 227 Ferris, 1997, Rapid evolution of sex-related genes in Chlamydomonas, Proceedings of the National Academy of Sciences of the United States of America, 94, 8634, 10.1073/pnas.94.16.8634 Glass, 1992, Mating type and vegetative incompatibility in filamentous ascomycetes, Annual Review of Phytopathology, 30, 201, 10.1146/annurev.py.30.090192.001221 Glass, 1990, Homothallic Sordariaceae from nature: the absence of strains containing only the a mating-type sequence, Experimental Mycology, 14, 274, 10.1016/0147-5975(90)90025-O Goodenough, 1995, A dramatic evolution of sex genes is associated with speciation, Molecular Biology of the Cell, 6, 16A Hall, 1999, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symposium Series, 41, 95 Kanematsu, 2007, Mating-type loci of heterothallic Diaporthe spp.: homologous genes are present in opposite mating-types, Current Genetics, 52, 11, 10.1007/s00294-007-0132-3 Kanematsu, 2000, Molecular phylogenetic analysis on ribosomal DNA internal transcribed spacer regions and comparison of fertility in Phomopsis isolates from fruit trees, Journal of General Plant Pathology, 66, 191, 10.1007/PL00012944 Kronstad, 1997, Mating type in filamentous fungi, Annual Review of Genetics, 31, 245, 10.1146/annurev.genet.31.1.245 Metzenberg, 1990, Mating type and mating type strategies in Neurospora, Bioessays, 12, 53, 10.1002/bies.950120202 Mostert, 2001, Species of Phomopsis and a Libertella sp. occurring on grapevines with specific reference to South Africa: morphological, cultural, molecular and pathological characterization, Mycologia, 93, 146, 10.2307/3761612 Nei, 2000 Nelson, 1996, Mating systems in ascomycetes: a romp in the sac, Trends in Genetics, 12, 69, 10.1016/0168-9525(96)81403-X O'Donnell, 1997, Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous, Molecular Phylogenetics and Evolution, 7, 103, 10.1006/mpev.1996.0376 O'Donnell, 1998, Molecular systematic and phylogeography of the Gibberella fujikuroi species complex, Mycologia, 90, 465, 10.2307/3761407 Phillips, 2007, Diplodia seriata, the anamorph of “Botryosphaeria”, obtusa. Fungal Diversity, 25, 141 Pöggeler, 2001, Mating-type genes for classical strain improvements of ascomycetes, Applied Microbiology and Biotechnology, 56, 589, 10.1007/s002530100721 Rehner, 1994, Nuclear ribosomal internal transcribed spacer phylogeny and host diversity in the coelomycete Phomopsis, Canadian Journal of Botany, 72, 1666, 10.1139/b94-204 Ronquist, 2003, MrBayes3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180 Santos JM, 2008. Resolução do complexo de espécies de Phomopsis e dos seus teleomorfos Diaporthe no hospedeiro Foeniculum vulgare. MSc thesis, Universidade de Lisboa. Santos, 2009, Resolving the complex of Diaporthe (Phomopsis) species occurring on Foeniculum vulgare in Portugal, Fungal Diversity, 34, 111 Sharon, 1996, An asexual fungus has the potential for sexual development, Molecular Genetics and Genomics, 251, 60, 10.1007/BF02174345 Swofford, 2002 Tamura, 2007, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Molecular Biology and Evolution, 24, 1596, 10.1093/molbev/msm092 Thompson, 1997, The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Research, 25, 4876, 10.1093/nar/25.24.4876 Turgeon, 1998, Application of mating type gene technology to problems in fungal biology, Annual Review of Phytopathology, 36, 115, 10.1146/annurev.phyto.36.1.115 Turgeon, 2000, Proposed nomenclature for mating type genes of filamentous ascomycetes, Fungal Genetics and Biology, 31, 1, 10.1006/fgbi.2000.1227 Uecker, 1988, A world list of Phomopsis names with notes on nomenclature, morphology and biology, Mycologia Memoir, 13, 1 van Niekerk, 2005, Reassessment of Phomopsis species on grapevine, Australasian Plant Pathology, 34, 27, 10.1071/AP04072 van Niekerk, 2004, Systematic reappraisal of Coniella and Pilidiella, with specific reference to species occurring on Eucalyptus and Vitis in South Africa, Mycological Research, 108, 283, 10.1017/S0953756204009268 van Rensburg, 2006, Characterisation of Phomopsis spp. associated with die-back of rooibos (Aspalathus linearis) in South Africa, Studies in Mycology, 55, 65, 10.3114/sim.55.1.65 Young, 2003, GapCoder automates the use of indel characters in phylogenetic analysis, BMC Bioinformatics, 4, 10.1186/1471-2105-4-6 Yun, 2000, Molecular organization of mating type loci in heterothallic, homothallic, and asexual Gibberella/Fusarium species, Fungal Genetics and Biology, 31, 7, 10.1006/fgbi.2000.1226 Yun, 1999, Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors, Proceedings of the National Academy of Sciences of the United States of America, 96, 5592, 10.1073/pnas.96.10.5592