Prevalence of Escherichia coli O157:H7 prophage-like sequences among German Salmonella enterica serotype Typhimurium phage types and their use in detection of phage type DT104 by the polymerase chain reaction

Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucl. Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Anderson, 1977, Bacteriophage-typing designations of Salmonella typhimurium, J. Hyg., 78, 297, 10.1017/S0022172400056187 Arcangioli, 1999, A new chloramphenicol and florfenicol resistance gene flanked by two integron structures in Salmonella typhimurium DT104, FEMS Microbiol. Lett., 174, 327, 10.1111/j.1574-6968.1999.tb13586.x Bäumler, A.J., Tsolis, M.R., Heffron, F., 2000. Virulence mechanisms of Salmonella and their genetic basis. In: Wray, C., Wray, A. (Eds.), Salmonella in Domestic Animals. CAB International, New York, pp. 57–72. Bolton, 1999, Detection of multidrug-resistant Salmonella enterica serotype Typhimurium DT104 based on a gene which confers cross-resistance to florfenicol and chloramphenicol, J. Clin. Microbiol., 37, 1348, 10.1128/JCM.37.5.1348-1351.1999 Briggs, 1999, Molecular characterization of an antibiotic resistance gene cluster of Salmonella typhimurium DT104, Antimicrob. Agents Chemother., 43, 846, 10.1128/AAC.43.4.846 Carlson, 1999, Detection of multiresistant Salmonella typhimurium DT104 using multiplex and fluorogenic PCR, Mol. Cell. Probes, 13, 213, 10.1006/mcpr.1999.0240 Cloeckaert, 2001, Molecular characterization, spread and evolution of multidrug resistance in Salmonella enterica Typhimurium DT104, Vet. Res., 32, 301, 10.1051/vetres:2001126 Cloeckaert, 2000, Occurrence of a Salmonella enterica serovar Typhimurium DT104-like antibiotic resistance gene cluster including the floR gene in S. enterica serovar Agona, Antimicrob. Agents Chemother., 44, 1359, 10.1128/AAC.44.5.1359-1361.2000 Deutsches Institut für Normung e.V., 1989. Methods for the determination of susceptibility of pathogens (except mycobacteria) to antimicrobial agents agar diffusion test DIN 58940. Part 3. Deutsches Institut für Normung e.V., Berlin. Figueroa-Bossi, 2001, Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella, Mol. Microbiol., 39, 260, 10.1046/j.1365-2958.2001.02234.x Humphrey, 2001, Salmonella Typhimurium definitive type 104. A multi-resistant Salmonella, Int. J. Food Microbiol., 67, 173, 10.1016/S0168-1605(01)00503-7 Khan, 2000, Detection of multidrug-resistant Salmonella typhimurium DT104 by multiplex polymerase chain reaction, FEMS Microbiol. Lett., 182, 355, 10.1111/j.1574-6968.2000.tb08921.x Liu, 1993, The XbaI–BlnI–CeuI genomic cleavage map of Salmonella typhimurium LT2 determined by double digestion, end labelling, and pulsed-field gel electrophoresis, J. Bacteriol., 175, 4104, 10.1128/jb.175.13.4104-4120.1993 Malorny, 2001, Evaluation of molecular typing methods for Salmonella enterica serovar Typhimurium DT104 isolated in Germany from healthy pigs, Vet. Res., 32, 119, 10.1051/vetres:2001116 Millemann, 1995, Value of plasmid profiling, ribotyping, and detection of IS200 for tracing avian isolates of Salmonella typhimurium and S. enteritidis, J. Clin. Microbiol., 33, 173, 10.1128/JCM.33.1.173-179.1995 Perna, 2001, Genome sequence of enterohaemorrhagic Escherichia coli O157:H7, Nature, 409, 529, 10.1038/35054089 Popoff, M.Y., Minor, L.L., 1997. Antigenic formulas of the Salmonella serovars. WHO Collaborating Centre for Reference and Research on Salmonella, Institut Pasteur, Paris, France. Pritchett, 2000, Identification of DT104 and U302 phage types among Salmonella enterica serotype Typhimurium isolates by PCR, J. Clin. Microbiol., 38, 3484, 10.1128/JCM.38.9.3484-3488.2000 Sandvang, 1997, Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104, FEMS Microbiol. Lett., 157, 177, 10.1111/j.1574-6968.1997.tb12770.x Soumet, 1999, Identification by a multiplex PCR-based assay of Salmonella Typhimurium and Salmonella Enteritidis strains from environmental swabs of poultry houses, Lett. Appl. Microbiol., 29, 1, 10.1046/j.1365-2672.1999.00559.x Threlfall, 2000, Epidemic Salmonella typhimurium DT 104—a truly international multiresistant clone, J. Antimicrob. Chemother., 46, 7, 10.1093/jac/46.1.7 Threlfall, 1994, Epidemic in cattle and humans of Salmonella typhimurium DT 104 with chromosomally integrated multiple drug resistance, Vet. Rec., 134, 577, 10.1136/vr.134.22.577 Yokoyama, 2000, Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak, Gene, 258, 127, 10.1016/S0378-1119(00)00416-9