Prediction of gene expression and codon usage in human parasitic helminths
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Behura SK, Severson DW (2013) Codon usage bias: causative factors, quantification methods and genome-wide patterns: with emphasis on insect genomes. Biol Rev 88:49–61
Bockarie MJ, Taylor MJ, Gyapong JO (2009) Current practices in the management of lymphatic filariasis. Expert Rev Anti Infect Ther 7:595–605
Chen H, Sun S, Norenburg JL, Sundberg P (2014) Mutation and selection cause codon usage and bias in mitochondrial genomes of ribbon worms (Nemertea). PLoS One 9:e85631
Gissi C, Iannelli F, Pesole G (2008) Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 101:301–320
Gupta S, Ghosh T (2001) Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa. Gene 273:63–70
Ingvarsson PK (2007) Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula. Mol Biol Evol 24:836–844
Jenkins GM, Holmes EC (2003) The extent of codon usage bias in human RNA viruses and its evolutionary origin. Virus Res 92:1–7
Manguin S, Bangs M, Pothikasikorn J, Chareonviriyaphap T (2010) Review on global co-transmission of human Plasmodium species and Wuchereria bancrofti by Anopheles mosquitoes. Infect Genet Evol 10:159–177
Melrose WD (2002) Lymphatic filariasis: new insights into an old disease. Int J Parasitol 32:947–960
Plotkin JB, Kudla G (2011) Synonymous but not the same: the causes and consequences of codon bias. Nat Rev Genet 12:32–42
Powell JR, Moriyama EN (1997) Evolution of codon usage bias in Drosophila. Proc Natl Acad Sci USA 94:7784–7790
Richter C, Park JW, Ames BN (1988) Normal oxidative damage to mitochondrial and nuclear DNA is extensive. Proc Natl Acad Sci USA 85:6465–6467
Sharp PM, Li WH (1986a) Codon usage in regulatory genes in Escherichia coli does not reflect selection for ‘rare’codons. Nucleic Acids Res 14:7737–7749
Sharp PM, Li WH (1986b) An evolutionary perspective on synonymous codon usage in unicellular organisms. J Mol Evol 24:28–38
Sharp PM, Li WH (1987) The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15:1281–1295
Stock S (2009) Molecular approaches and the taxonomy of insect–parasitic and pathogenic nematodes. Insect pathogens: molecular approaches and techniques. Cabi Publishing—CABI, Wallingford, pp 71–100
Sun Z, Wan DG, Murphy RW, Ma L, Zhang XS, Huang DW (2009) Comparison of base composition and codon usage in insect mitochondrial genomes. Genes Genom 31:65–71
Uddin A, Chakraborty S (2014) Mutation pressure dictates codon usage pattern in mitochondrial ATP8 in some mammalian species. Int J Sci Res 3:1206–1212
Wang HC, Hickey DA (2007) Rapid divergence of codon usage patterns within the rice genome. BMC Evol Biol 7:S6
Wei L, He J, Jia X, Qi Q, Liang Z, Zheng H, Ping Y, Liu S, Sun J (2014) Analysis of codon usage bias of mitochondrial genome in Bombyx mori and its relation to evolution. BMC Evol Biol 14:262