Prediction and verification of microRNAs related to proline accumulation under drought stress in potato

Aukerman, 2003, Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes, Plant Cell, 15, 2730, 10.1105/tpc.016238

Bartel, 2003, MicroRNAs: at the root of plant development?, Plant Physiology, 132, 709, 10.1104/pp.103.023630

Bates, 1973, Rapid determination of free proline content for water-stress studies, Plant Soil, 39, 205, 10.1007/BF00018060

Bonnet, 2004, Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes, Proceedings of the National Academy of Sciences of the United States of America, 101, 11511, 10.1073/pnas.0404025101

Chapman, 2004, Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step, Genes Development, 18, 1179, 10.1101/gad.1201204

Chen, 2004, A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development, Science, 303, 2022, 10.1126/science.1088060

Chiou, 2007, The role of microRNAs in sensing nutrient stress, Plant, Cell and Environment, 30, 323, 10.1111/j.1365-3040.2007.01643.x

Doerner, 2008, Phosphate starvation signaling: a threesome controls systemic Pi homeostasis, Current Opinion in Plant Biology, 11, 536, 10.1016/j.pbi.2008.05.006

Dugas, 2008, Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases, Plant Molecular Biology, 67, 403, 10.1007/s11103-008-9329-1

Fabro, 2004, Proline accumulation and AtP5CS2 gene activation are induced by plant–pathogen incompatible interactions in Arabidopsis, Molecular Plant-Microbe Interactions, 17, 343, 10.1094/MPMI.2004.17.4.343

Feng, 2009, The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR, Gene, 437, 14, 10.1016/j.gene.2009.01.017

Floyd, 2004, Ancient microRNA target sequences in plants, Nature, 428, 485, 10.1038/428485a

Gerbens-Leenes, 2009, The water footprint of bioenergy, Proceedings of the National Academy of Sciences of the United States of America, 106, 10219, 10.1073/pnas.0812619106

Griffiths-Jones, 2006, miRBase: the microRNA sequence database, Methods in Molecular Biology, 342, 129

Griffiths-Jones, 2006, miRBase: microRNA sequences, targets and gene nomenclature, Nucleic Acids Research, 34, D140, 10.1093/nar/gkj112

Guddeti, 2005, Molecular evolution of the rice miR395 gene family, Cell Research, 15, 631, 10.1038/sj.cr.7290333

Guo, 2005, MicroRNA directs mRNA cleavage of the transcription factor NAC1 to down regulate auxin signals for Arabidopsis lateral root development, Plant Cell, 17, 1376, 10.1105/tpc.105.030841

Hwang, 2011, Identification of miR172 family members and their putative targets responding to drought stress in Solanum tuberosum, Genes and Genomics, 33, 105, 10.1007/s13258-010-0135-1

Hwang, 2011, miR171 family members are involved in drought response in Solanum tuberosum, Journal of Plant Biology, 54, 43, 10.1007/s12374-010-9141-8

Jones-Rhoades, 2006, MicroRNAs and their regulatory roles in plants, Annual Review of Plant Biology, 57, 19, 10.1146/annurev.arplant.57.032905.105218

Kishor, 1995, Overexpression of [delta]-pyrroline-5-carboxylate synthetase increases proline production and confers osmotolerance in transgenic plants, Plant Physiology, 108, 1387, 10.1104/pp.108.4.1387

Lauter, 2005, MicroRNA172 down-regulates glossy15 to promote vegetative phase change in maize, Proceedings of the National Academy of Sciences of the United States of America, 102, 9412, 10.1073/pnas.0503927102

Lehmann, 2010, Proline metabolism and transport in plant development, Amino Acids, 39, 949, 10.1007/s00726-010-0525-3

Llave, 2002, Endogenous and silencing-associated small RNAs in plants, Plant Cell, 14, 1605, 10.1105/tpc.003210

Mallory, 2004, MicroRNA regulation of NAC domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs, Current Biology, 14, 1035, 10.1016/j.cub.2004.06.022

Palatnik, 2003, Control of leaf morphogenesis by microRNAs, Nature, 425, 257, 10.1038/nature01958

Rhoades, 2002, Prediction of plant microRNA targets, Cell, 110, 513, 10.1016/S0092-8674(02)00863-2

Sahi, 2006, Salt stress response in rice: genetics, molecular biology, and comparative genomics, Functional and Integrative Genomics, 6, 263, 10.1007/s10142-006-0032-5

Sunkar, 2005, Cloning and characterization of microRNA from rice, Plant Cell, 17, 1397, 10.1105/tpc.105.031682

Szabados, 2010, Proline: a multifunctional amino acid, Trends in Plant Science, 15, 89, 10.1016/j.tplants.2009.11.009

Usha, 2012, Computational predictions of common transcription factor binding sites on the genes of proline metabolism in plants, Bioinformation, 8, 886, 10.6026/97320630008886

Verbruggen, 1993, Osmoregulation of a pyrroline-5-carboxylate reductase gene in Arabidopsis thaliana, Plant Physiology, 103, 771, 10.1104/pp.103.3.771

Voinnet, 2009, Origin, biogenesis, and activity of plant microRNAs, Cell, 136, 669, 10.1016/j.cell.2009.01.046

Wang, 2005, Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis, Plant Cell, 17, 2204, 10.1105/tpc.105.033076

Wollmann, 2010, On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development, Development, 137, 3633, 10.1242/dev.036673

Yamada, 2005, Effects of free proline accumulation in petunias under drought stress, Journal of Experimental Botany, 56, 1975, 10.1093/jxb/eri195

Yang, 2009, Hydrogen peroxide-induced proline and metabolic pathway of its accumulation in maize seedlings, Journal of Plant Physiology, 166, 1694, 10.1016/j.jplph.2009.04.006

Yoshiba, 1995, Correlation between the induction of a gene for delta-1-pyrroline-5-carboxylate synthetase and the accumulation of proline in Arabidopsis thaliana under osmotic stress, Plant Journal, 7, 751, 10.1046/j.1365-313X.1995.07050751.x

Zhang, 2006, Identification of 188 conserved maize microRNAs and their targets, FEBS Letters, 580, 3753, 10.1016/j.febslet.2006.05.063

Zhang, 2006, Conservation and divergence of plant microRNA genes, Plant Journal, 46, 243, 10.1111/j.1365-313X.2006.02697.x

Zhang, 2007, Identification of cotton microRNAs and their targets, Gene, 397, 26, 10.1016/j.gene.2007.03.020

Zhang, 2009, Computational identification of 48 potato microRNAs and their targets, Computational Biology and Chemistry, 33, 84, 10.1016/j.compbiolchem.2008.07.006