Potyviruses and the Digital Revolution

Annual Review of Phytopathology - Tập 48 Số 1 - Trang 205-223 - 2010
Adrian Gibbs1, Kazusato Ohshima2
1Emeritus Faculty, Australian National University, Canberra, ACT 0200, Australia;
2Laboratory of Plant Virology, Faculty of Agriculture, Saga University, Saga 840-8502, Japan

Tóm tắt

The potyviruses are one of the two most speciose taxa of plant viruses. Our expanded knowledge of the breadth and depth of their diversity and its origins has depended greatly on the use of computing and the Internet in biological research and is reviewed here. We report a fully supported phylogeny based on gene sequence data for approximately half the named species. The phylogeny shows that the genus probably originated from a virus of monocotyledonous plants and that it first diverged approximately 7250 years ago in Southwest Eurasia or North Africa. The use of computer programs to better understand the structure and evolutionary trajectory of potyvirus populations is illustrated. The review concludes with recommendations for improving potyvirus nomenclature and the databasing of potyvirus information.

Từ khóa


Tài liệu tham khảo

10.1007/s00705-004-0440-6

10.1007/978-3-7091-6920-9

10.7312/beck93140

4. Bellwood P. 2005.First Farmers: The Origins of Agricultural Societies. Malden/Oxford/Carlton: Blackwell Publ. 360 pp.

10.1007/BF02983032

10.1007/BF01976763

10.1007/978-3-7091-6920-9_4

Boswell KF, 1986, Rev. Plant Pathol., 65, 221

Bowman V, 1992, Arch. Virol., 5, 337, 10.1007/978-3-7091-6920-9_36

Brandes, 1919, Tech. Bull. US Dep. Agric., 829, 1

11. Brunt AA, Crabtree K, Dallwitz M, Gibbs A, Watson L. 1996.Viruses of Plants. Oxfordshire, UK: CABI. 1484 pp.

10.1109/MCISE.2003.1196303

10.1186/1471-2148-9-61

14. Burnett F. 1947.Report on Agriculture in Malaya for the Year 1946. Malaya Dept. Agric., Kuala Lumpur 85 pp.

10.1016/S0065-3527(06)67001-2

10.2307/1219595

10.1007/s00705-004-0340-9

10.1007/s00705-008-0170-2

10.1007/978-3-7091-6920-9_41

10.1016/B978-0-12-374153-0.00004-7

21. Doolittle SP, Jones FR. 1925.Phytopathology15:763

10.1016/0966-842X(96)20011-3

Eigen M, 1988, RNA Genetics. Vol. 3, 211

10.1007/s10658-008-9390-2

10.1186/1471-2148-6-1

10.1146/annurev.phyto.41.052002.095559

10.1007/s00705-004-0344-5

10.1146/annurev.phyto.39.1.157

29. Gibbs A, Harrison B. 1976.Plant Virology: The Principles. London: Edward Arnold. 292 pp.

10.1099/vir.0.015925-0

10.1007/s00705-006-0775-2

10.1016/B978-0-12-374153-0.00011-4

10.1007/s00705-008-0134-6

10.1371/journal.pone.0002523

10.1007/s00705-008-0256-x

10.1146/annurev.py.24.090186.001445

10.1007/978-3-7091-6920-9_30

10.1080/10635150390235520

Hall TA, 1999, Nucleic Acids Symp. Ser., 41, 95

10.1111/j.1744-7348.1981.tb04787.x

10.1016/0042-6822(71)90336-9

10.1007/978-3-7091-6920-9_34

10.1073/pnas.89.22.10915

44. Holmes EC. 2009.The Evolution and Emergence of RNA Viruses. Oxford, UK: Oxford Univ. Press. 254 pp.

10.1016/j.virusres.2009.03.008

10.1016/j.virol.2009.07.016

10.1007/s00705-008-0132-8

Jensen DD, 1949, Phytopathology, 39, 191

10.1016/0014-5793(94)80429-X

10.1016/j.virusres.2008.07.028

10.1093/nar/gkf436

10.1038/nrmicro2030

10.1111/j.1365-3059.2008.01902.x

10.1600/0363644053661959

10.1007/s10327-004-0165-0

10.1093/molbev/msn067

10.1017/CBO9780511819049

10.1093/bioinformatics/bth490

10.1007/978-3-7091-6920-9_43

Melgarejo TA, 2004, Arch. Virol., 149, 2025, 10.1007/s00705-004-0356-1

Melhus IE, 1929, Phytopathology, 19, 73

10.1159/000149624

10.1007/978-3-7091-6920-9_42

10.1016/0042-6822(76)90396-2

10.1099/00207713-45-1-186

10.1016/j.virusres.2007.09.010

10.1099/vir.0.82335-0

10.1099/0022-1317-83-6-1511

10.1007/s00705-006-0756-5

10.1071/BI9800245

10.1094/MPMI.1999.12.5.367

10.1099/0022-1317-73-1-1

Saitou N, 1987, Mol. Biol. Evol., 4, 406

10.1515/znb-1956-0707

10.1128/JVI.75.14.6566-6571.2001

Schulz ES, 1921, J. Agric. Res., 22, 123

10.1016/j.virol.2009.07.007

10.1007/s00705-004-0390-z

10.1099/0022-1317-69-11-2703

10.1007/BF01313952

81. Shukla DD, Ward CW, Brunt AA. 1994.The Potyviridae.Wallingford, UK: CABI 516 pp.

82. Shukla DD, Ward CW, Brunt AA, Berger PH. 1998. Potyviridae family.AAB Descriptions of Plant Viruses.http://www.dpvweb.net/dpv/showdpv.php?dpvno=366

83. Simmonds NM, ed. 1976.Evolution of Crop Plants. London, UK: Longman. 339 pp.

10.1099/vir.0.83543-0

85. Smarrt J, Simmonds NM, eds. 1995.Evolution of Crop Plants. London, UK: Longman. 340 pp. 2nd ed.

10.1098/rspb.1931.0080

87. Smith KM. 1957.A Textbook of Plant Virus Diseases. London, UK: Churchill. 652 pp.

10.1099/vir.0.19208-0

Stewart VB, 1917, Phytopathology, 7, 61

10.1046/j.1365-294X.2003.01881.x

10.1016/j.virol.2004.09.040

10.1111/j.1365-294X.2006.03094.x

10.1016/S0168-1702(01)00220-9

10.1007/978-3-7091-6920-9_35

10.1007/BF01313804

10.3201/eid1001.030279

10.1007/978-3-7091-6920-9_44

10.1099/vir.0.82814-0

10.1007/978-3-7091-6920-9_29

10.1159/000150211

10.1017/CBO9780511661686.034

10.1111/j.1365-3059.2007.01653.x

103. Weiller GF. 1999.TransAlign Version 1.0.http://www.rsbs.anu.edu.au/Products&Services/BiotechnologyTransferUnit/transalign.php

10.1093/oxfordjournals.molbev.a003851

10.1071/BT9700387

10.1007/BF01311116

Zimmer K, 1956, Phytopath. Z., 26, 439

Thông tin
Thông tin xuất bản

Annual Review of Phytopathology

Tập 48 Số 1

205-223

Thông tin tác giả