Porcine insulin-like growth factor 1 (IGF1) gene polymorphisms are associated with body size variation

Springer Science and Business Media LLC - Tập 35 - Trang 523-528 - 2013
Pengxia Niu1, Sang-Wook Kim1, Bong-Hwan Choi2, Tae-Hun Kim2, Jong-Joo Kim3, Kwan-Suk Kim1
1Department of Animal Science, Chungbuk National University, Cheongju-Si, Chungbuk, South Korea
2Division of Animal Genomics and Bioinformatics, National Institute of Animal Science, Suwon, Korea
3School of Biotechnology, Yeungnam University, Gyeongsan, South Korea

Tóm tắt

Previous studies have confirmed that insulin growth factor-1 (IGF1) plays important roles in growth and body size in humans and animals. However, whether single nucleotide polymorphisms (SNPs) within the IGF1 gene affects body size and growth in pigs has been unclear. We identified IGF1 SNPs among 5 pig breeds (Berkshire, Duroc, Landrace, Yorkshire and Korea Native Pig) and found that the G allele of SNP (c.G189A) was associated with higher body weight and was more predominant in western pig breeds, while the Korean Native Pig is the breed with the highest frequency of the A allele. Four haplotypes (–GA–, –GG–, –AG–, and –AA–) were constructed using the 2 identified SNPs. The GA haplotype was most frequently observed, except in the Berkshire breed. In addition, these SNPs and haplotypes were significantly associated with body size (final weight), average daily gain, and backfat thickness (P < 0.05) in 2 intercrossed F2 pig populations (KNP × YS F2 and KNP × LR F2). Furthermore, the major GA haplotype had a significant additive effect on body size and average daily gain. In conclusion, specific SNPs within the porcine IGF1 gene may contribute to the smaller body size and lower growth rate of Korea Native Pigs.

Tài liệu tham khảo

Barrett JC, Fry B, Maller J, Daly MJ (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263–265 Bian LH, Wang SZ, Wang QG, Zhang S, Wang YX, Li H (2008) Variation at the insulin-like growth factor 1 gene and its association with body weight traits in the chicken. J Anim Breed Genet 125:265–270 Boyko AR, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD, Lohmueller KE, Zhao K, Brisbin A, Parker HG, vonHoldt BM et al (2010) A simple genetic architecture underlies morphological variation in dogs. PLoS Biol 8:e1000451 Choi TS, Park BY, Lee JM, Lee SK (2005) Comparison of carcass and meat quality characteristics between Korean native black pigs and commercial crossbred pigs. Korean J Food Sci Ani Resour 25:322–327 Estany J, Tor M, Villalba D, Bosch L, Gallardo D, Jimenez N, Altet L, Noguera JL, Reixach J, Amills M et al (2007) Association of CA repeat polymorphism at intron 1 of insulin-like growth factor (IGF-I) gene with circulating IGF-I concentration, growth, and fatness in swine. Physiol Genomics 31:236–243 Kim EH, Choi BH, Kim KS, Lee CK, Cho BW, Kim TH, Kim JJ (2007) Detection of Mendelian and parent-of-origin quantitative trait loci in a cross between Korean native pig and Landrace I. Growth and body composition traits. Asian-Aust J Anim Sci 19:1702–1705 Kim JJ, Lee HI, Park T, Kim K, Lee JE, Cho NH, Shin C, Cho YS, Lee JY, Han BG et al (2010) Identification of 15 loci influencing height in a Korean population. J Hum Genet 55:27–31 Kim SW, Li XP, Lee YM, Choi YI, Cho BW, Choi BH, Kim TH, Kim JJ, Kim KS (2011) QTL scan for meat quality traits using high-density SNP chip analysis in cross between Korean native pig and Yorkshire. Asian-Aust J Anim Sci 24:1184–1191 Li JQ, Chen ZM, Liu DW, Liu XH, Sun BL, Ling F, Zhang H, Chen YS (2003) Genetic effects of IGF-1 gene on the performance in Landrace × Lantang pig resource population. Yi Chuan Xue Bao 30:835–839 Okada Y, Kamatani Y, Takahashi A, Matsuda K, Hosono N, Ohmiya H, Daigo Y, Yamamoto K, Kubo M, Nakamura Y et al (2010) A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. Hum Mol Genet 19:2303–2312 Reyna XF, Montoya HM, Castrellon VV, Rincon AM, Bracamonte MP, Vera WA (2010) Polymorphisms in the IGF1 gene and their effect on growth traits in Mexican beef cattle. Genet Mol Res 9:875–883 Silventoinen K, Magnusson PK, Tynelius P, Kaprio J, Rasmussen F (2008) Heritability of body size and muscle strength in young adulthood: a study of one million Swedish men. Genet Epidemiol 32:341–349 Stephens M, Smith N, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978–989 Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG et al (2007) A single IGF1 allele is a major determinant of small size in dogs. Science 316:112–115 Suzuki K, Nakagawa M, Katoh K, Kadowaki H, Shibata T, Uchida H, Obara Y, Nishida A (2004) Genetic correlation between serum insulin-like growth factor-1 concentration and performance and meat quality traits in Duroc pigs. J Anim Sci 82:994–999 Tang S, Sun D, Ou J, Zhang Y, Xu G (2010) Evaluation of the IGFs (IGF1 and IGF2) genes as candidates for growth, body measurement, carcass, and reproduction traits in Beijing You and Silkie chickens. Anim Biotechnol 21:104–113 van Wijk HJ, Arts DJ, Matthews JO, Webster M, Ducro BJ, Knol EF (2005) Genetic parameters for carcass composition and pork quality estimated in a commercial production chain. J Anim Sci 83:324–333 Wintero AK, Fredholm M, Andersson L (1994) Assignment of the gene for porcine insulin-like growth factor 1 (IGF1) to chromosome 5 by linkage mapping. Anim Genet 25:37–39 Yang TL, Xiong DH, Guo Y, Recker RR, Deng HW (2008) Comprehensive association analyses of IGF1, ESR2, and CYP17 genes with adult height in Caucasians. Eur J Hum Genet 16:1380–1387