Population genetic structure in wild and aquaculture populations of Hemibarbus maculates inferred from microsatellites markers

Aquaculture and Fisheries - Tập 2 - Trang 78-83 - 2017
Linlin Li1, Hungdu Lin2, Wenqiao Tang1, Dong Liu1, Baolong Bao1, Jinquan Yang1
1Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China
2The Affiliated School of National Tainan First Senior High School, Tainan 701, Taiwan, China

Tài liệu tham khảo

An, 2014, Genetic differences between the wild and hatchery-produced populations of Korean short barbeled grunter (Hapalogenys nitens) determined with microsatellite markers, Genetics and Molecular Research, 13, 8901, 10.4238/2014.October.31.5 An, 2014, Genetic diversity and differentiation of the Korean starry flounder (Platichthys stellatus) between and within cultured stocks and wild populations inferred from microsatellite DNA analysis, Molecular Biology Reports, 11, 7281, 10.1007/s11033-014-3614-7 Bergh, 1989, Stability and harvesting of competing populations with genetic variation in life history strategy, Genetics, 113, 939 Bohling, 2016, Genetic diversity and population structure of domestic brown trout (Salmo trutta) in France, Aquaculture, 462, 1, 10.1016/j.aquaculture.2016.04.013 Chen, 2010, Effect of dietary protein levels on growth performance and whole body composition of summerling and winterling spotted barbel (Hemibarbus maculates Bleeker), Aquaculture Nutrition, 16, 412, 10.1111/j.1365-2095.2009.00680.x DeWoody, 2000, Microsatellite variation in marine, freshwater and anadromous fishes compared to other animals, Journal of Fish Biology, 56, 461, 10.1111/j.1095-8649.2000.tb00748.x Dudgeon, 2006, Freshwater biodiversity: Importance, threats, status and conservation challenges, Biological reviews, 81, 163, 10.1017/S1464793105006950 Evanno, 2005, Detecting the number of clusters of individuals using the software structure: A simulation study, Molecular Ecology, 14, 2611, 10.1111/j.1365-294X.2005.02553.x Excoffier, 2010, Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows, Molecular Ecology Resources, 10, 564, 10.1111/j.1755-0998.2010.02847.x Fu, 2003, Freshwater fish biodiversity in the Yangtze river basin of China: Patterns, threats and conservation, Biodiversity and Conservation, 12, 1649, 10.1023/A:1023697714517 Goudet, 2002 Gu, 2006, Evaluation of nutritive quality and nutritional components in Hemibarbus maculates Bleeker muscle, Journal of Dalian Fisheries University, 21, 378 Hauser, 2002, Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus), Proceedings of the National Academy of Sciences of the United States of America, 99, 11742, 10.1073/pnas.172242899 Kang, 2009, Fish and fisheries in the Upper Mekong: Current assessment of the fish community, threats and conservation, Reviews in Fish Biology and Fisheries, 19, 465, 10.1007/s11160-009-9114-5 Liao, 2006, Genetic diversity of common carp from two largest Chinese lakes and the Yangtze River revealed by microsatellite markers, Hydrobiologia, 568, 445, 10.1007/s10750-006-0222-0 Lin, 2005, Sexual dimorphism and female reproductive output of Hemibarbus maculates, Journal of Shanghai Jiaotong University (Agricultural Science), 3, 015 Li, 2012, The complete mitochondrial genome of the spotted steed, Hemibarbus maculatus (Teleostei, Cypriniformes), Mitochondrial DNA, 23, 34, 10.3109/19401736.2011.643880 Luo, 2015, Population genetic structure in wild and hatchery populations of white cloud mountain minnow (Tanichthys albonubes): Recommendations for conservation, Biochemical Systematics and Ecology, 62, 140, 10.1016/j.bse.2015.08.008 Miao, 1983, A study on the biology of spotted carp (Hemibarbus maculates) in Tai Hu, Journal of Fisheries of China, 7, 31 Nagy, 2012, PICcalc: An online program to calculate polymorphic information content for molecular genetic studies, Biochemical genetics, 50, 670, 10.1007/s10528-012-9509-1 Nei, 1983, Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data, Genetics, 105, 207, 10.1093/genetics/105.1.207 Page, 1996, TreeView: An application to display phylogenetic trees on personal computers, Computer Applications in the Biosciences, 12, 357 Powell, 1996, The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis, Molecular Breeding, 2, 225, 10.1007/BF00564200 Pritchard, 2000, Inference of population structure using multilocus genotype data, Genetics, 155, 945, 10.1093/genetics/155.2.945 Pritchard, 2004 Qi, 2015, Determination of genetic diversity of wild and cultured topmouth culter (Culter alburnus) inhabiting China using mitochondrial DNA and microsatellites, Biochemical Systematics and Ecology, 61, 232, 10.1016/j.bse.2015.06.023 Rice, 1989, Analyzing tables of statistical test, Evolution, 43, 223, 10.2307/2409177 Rousset, 2008, Genepop’007: A complete reimplementation of the Genepop software for Windows and Linux, Molecular Ecology Resources, 8, 103, 10.1111/j.1471-8286.2007.01931.x Saitou, 1987, The neighbor-joining method: A new method for reconstructing phylogenetic trees, Molecular Biology and Evolution, 4, 406 Sambrook, 1989, vol. 2, 14 Selkoe, 2006, Current shifts and kin aggregation explain genetic patchiness in fish recruits, Ecology, 87, 3082, 10.1890/0012-9658(2006)87[3082:CSAKAE]2.0.CO;2 Van Oosterhout, 2004, Micro-checker: Software for identifying and correcting genotyping errors in microsatellite, Molecular Ecology Resources, 4, 535, 10.1111/j.1471-8286.2004.00684.x Wang, 2008, Preliminary study on embryonic and larval development of Hemibarbus maculates Bleeker, Chinese Journal of Fisheries, 21, 1 Weir, 1984, Estimating F-statistics for the analysis of population structure, Evolution, 38, 1358, 10.2307/2408641 Xu, 2001, Genetic diversity of wild and cultured black tiger shrimp (Penaeus monodon) in the Philippines using microsatellites, Aquaculture, 199, 13, 10.1016/S0044-8486(00)00535-4 Xu, 2007, Studies on the karyotype of Hamibarbus maculates bleeker, Jiangxi Science, 2, 11 Yang, 2013, Microsatellite diversity and population genetic structure of Squalidus argentatus (Cyprinidae) on the Island of Hainan and mainland China, Biochemical Systematics and Ecology, 50, 7, 10.1016/j.bse.2013.03.023 Yang, 2015, Genetic structure and diversity in natural and stocked populations of the mandarin fish (Siniperca chuatsi) in China, Genetics and Molecular Research, 14, 5153, 10.4238/2015.May.18.5 Yan, 2007, Artificial propagation and seed breeding of Hemibarbus maculatus, Fisheries Science, 12, 5 Yu, 2012, Genetic differentiation between collections of hatchery and wild masu salmon (Oncorhynchus masou) inferred from mitochondrial and microsatellite DNA analyses, Environmental Biology of Fishes, 94, 259, 10.1007/s10641-011-9869-0 Zhang, 2006, Microsatellites analysis on genetic variation between wild and cultured populations of Ctenopharyngodon idella, Zoological Research, 27, 189 Zhou, 2011, Microsatellite analysis on genetic diversity of wild and cultured populations of Scylla paramamosain, Acta Agriculturae Zhejiangensis, 23, 712 Zhu, 2011, Twenty-four polymorphic microsatellite markers from spotted barbell (Hemibarbus maculates), Conservation Genetics Resources, 3, 239, 10.1007/s12686-010-9331-1 Zhuo, 2012, Genetic characterization of northern snakehead (Channa argus) populations in China using microsatellite markers, Biochemical Systematics and Ecology, 43, 25, 10.1016/j.bse.2012.02.024