Point-of-care devices for pathogen detections: The three most important factors to realise towards commercialization
Tài liệu tham khảo
Manz, 1990, Miniaturized total chemical analysis systems: a novel concept for chemical sensing, Sensor. Actuator. B Chem., 1, 244, 10.1016/0925-4005(90)80209-I
OAM, 2016
Vashist, 2017, Point-of-Care diagnostics: recent advances and trends, Biosensors, 7, 10, 10.3390/bios7040062
Gutierres, 2004, Point-of-Care testing: an introduction, Ann. Pharmacother., 38, 119, 10.1345/aph.1D212
Soares, 2018, Multiplexed microfluidic fluorescence immunoassay with photodiode array signal acquisition for sub-minute and point-of-need detection of mycotoxins, Lab Chip, 18, 1569, 10.1039/C8LC00259B
Wilkes, 2018, Rapid and sensitive insulated isothermal PCR for point-of-need feline leukaemia virus detection, J. Feline Med. Surg., 20, 362, 10.1177/1098612X17712847
Roda, 2014, Integrating biochemiluminescence detection on smartphones: mobile chemistry platform for point-of-need analysis, Anal. Chem., 86, 7299, 10.1021/ac502137s
Geldreich, 2014, Bacterial colonization of point-of-use water treatment devices author ( s ): Edwin E . Geldreich, Raymond H . Taylor, Janet C . Blannon and Donald J . Reasoner Source : journal ( American water works association ), Giardiasis : The N., 77, 72
Walsh, 2007, Evaluation of ten oral fluid point-of-collection drug-testing devices, J. Anal. Toxicol., 31, 44, 10.1093/jat/31.1.44
Urdea, 2006, Requirements for high impact diagnostics in the developing world, Nature, 444, 73, 10.1038/nature05448
Mabey, 2004, Diagnostics for the developing world, Nat. Rev. Microbiol., 2, 231, 10.1038/nrmicro841
Petralia, 2017, PCR technologies for point of care testing: progress and perspectives, ACS Sens., 2, 876, 10.1021/acssensors.7b00299
Pennathur, 2008, Improving fluorescence detection in lab on chip devices, Lab Chip, 8, 649, 10.1039/b805064n
Whitesides, 2006, The origins and the future of microfluidics, Nature, 442, 368, 10.1038/nature05058
Dittrich, 2005, Single-molecule fluorescence detection in microfluidic channels-the holy grail in ΜtAS?, Anal. Bioanal. Chem., 382, 1771, 10.1007/s00216-005-3335-9
Duffy, 1998, Rapid prototyping of microfluidic systems in poly(dimethylsiloxane), Anal. Chem., 70, 4974, 10.1021/ac980656z
Becker, 2008, Polymer microfabrication technologies for microfluidic systems, Anal. Bioanal. Chem., 89, 10.1007/s00216-007-1692-2
Lee, 2010
Miyauchi, 2006, Low-reflective and super-hydrophilic properties of titanate or titania nanotube thin films via layer-by-layer assembly, Thin Solid Films, 515, 2091, 10.1016/j.tsf.2006.07.008
Burke, 1996, vol. 1
Shih, 2006, Fabrication of PDMS (polydimethylsiloxane) microlens and diffuser using replica molding, Microelectron. Eng., 83, 2499, 10.1016/j.mee.2006.05.006
Khanarian, 2001, Optical properties of cyclic Olefin copolymers, Opt. Eng., 40, 1024, 10.1117/1.1369411
Ziaie, 2004, Hard and soft micromachining for BioMEMS: review of techniques and examples of applications in microfluidics and drug delivery, Adv. Drug Deliv. Rev., 56, 145, 10.1016/j.addr.2003.09.001
Coltro, 2008, Comparison of the analytical performance of electrophoresis microchannels fabricated in PDMS, glass, and polyester-toner, Electrophoresis, 29, 4928, 10.1002/elps.200700897
Martin, 2007, Plasma modification of PDMS microfluidic devices for control of electroosmotic flow, Plasma Process. Polym., 4, 414, 10.1002/ppap.200600197
Chun, 2006, Fabrication and validation of a multi-channel type microfluidic chip for electrokinetic streaming potential devices, Lab Chip, 6, 302, 10.1039/b514327f
Adams, 2012, High-throughput, temperature-controlled microchannel acoustophoresis device made with rapid prototyping, J. Micromech. Microeng., 22, 10.1088/0960-1317/22/7/075017
Wunderlich, 2013, Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutes, Nat. Protoc., 8, 1459, 10.1038/nprot.2013.082
Ghazal, 2016, Recent advances in X-ray compatible microfluidics for applications in soft materials and life sciences, Lab Chip, 4263, 10.1039/C6LC00888G
Bakajin, 2006, Materials aspects in micro- and nanofluidic systems applied to biology, MRS Bull., 31, 108, 10.1557/mrs2006.24
Reisner, 2009, Directed self-organization of single DNA molecules in a nanoslit via embedded nanopit arrays, Proc. Natl. Acad. Sci. U.S.A., 106, 79, 10.1073/pnas.0811468106
Waldauer, 2012, Microfluidic mixers for studying protein folding, JoVE, 62, 1
Izadi, 2017, Complete procedure for fabrication of a fused silica ultrarapid microfluidic mixer used in biophysical measurements, Micromachines, 8, 16, 10.3390/mi8010016
Jeon, 2010
Ahn, 2004, Disposable smart lab on a chip for point-of-care clinical diagnostics, Proc. IEEE, 92, 154, 10.1109/JPROC.2003.820548
Tsao, 2016, Polymer microfluidics: simple, low-cost fabrication process bridging academic lab research to commercialized production, Micromachines, 7, 10.3390/mi7120225
Hansen, 2010, Fast prototyping of injection molded polymer microfluidic chips, J. Micromech. Microeng., 20, 015020, 10.1088/0960-1317/20/1/015020
Calaon, 2013, A capability study of micro moulding for nano fluidic system manufacture, Proc. 13th Int. Conf. Eur. Soc. Precis. Eng. Nanotechnology, EUSPEN 2013, 2, 105
Calaon, 2017, Injection and injection-compression moulding replication capability for the production of polymer lab-on-a-chip with nano structures, J. Micromech. Microeng., 27, 10.1088/1361-6439/aa853f
Utko, 2011, Injection molded nanofluidic chips: fabrication method and functional tests using single-molecule DNA experiments, Lab Chip, 11, 303, 10.1039/C0LC00260G
Hung, 2015, Miniaturization of a micro-optics array for highly sensitive and parallel detection on an injection moulded lab-on-a-chip, Lab Chip, 15, 2445, 10.1039/C5LC00176E
Craw, 2012, Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review, Lab Chip, 12, 2469, 10.1039/c2lc40100b
Mandal, 2011, Methods for rapid detection of foodborne pathogens: an overview, Am. J. Food Technol., 87, 10.3923/ajft.2011.87.102
Afshari, 2012, Bench-to-Bedside review: rapid molecular diagnostics for bloodstream infection - a new frontier?, Crit. Care, 16, 222, 10.1186/cc11202
Kant, 2018, Microfluidic devices for sample preparation and rapid detection of foodborne pathogens, Biotechnol. Adv., 36, 1003, 10.1016/j.biotechadv.2018.03.002
Pereiro, 2017, A new microfluidic approach for the one-step capture, amplification and label-free quantification of bacteria from raw samples, Chem. Sci., 8, 1329, 10.1039/C6SC03880H
Hong, 2015, Continuous aerosol size separator using inertial microfluidics and its application to airborne bacteria and viruses, Lab Chip, 15, 1889, 10.1039/C5LC00079C
Ohlsson, 2016, Integrated acoustic separation, enrichment, and microchip polymerase chain reaction detection of bacteria from blood for rapid sepsis diagnostics, Anal. Chem., 88, 9403, 10.1021/acs.analchem.6b00323
Liu, 2017, Microfluidic diafiltration-on-chip using an integrated magnetic peristaltic micropump, Lab Chip, 17, 3796, 10.1039/C7LC00954B
Zhang, 2018, Detection of pathogenic microorganisms by microfluidics based analytical methods, Anal. Chem., 90, 5512, 10.1021/acs.analchem.8b00399
Kang, 2015, Optimization of pathogen capture in flowing fluids with magnetic nanoparticles, Small, 11, 5657, 10.1002/smll.201501820
Kang, 2014, An extracorporeal blood-cleansing device for sepsis therapy, Nat. Med., 20, 1211, 10.1038/nm.3640
Fernández-Baldo, 2010, Microfluidic immunosensor with micromagnetic beads coupled to carbon-based screen-printed electrodes (SPCEs) for determination of botrytis cinerea in tissue of fruits, J. Agric. Food Chem., 58, 11201, 10.1021/jf1025604
Jung, 2011, An integrated passive micromixer-magnetic separation-capillary electrophoresis microdevice for rapid and multiplex pathogen detection at the single-cell level, Lab Chip, 11, 3465, 10.1039/c1lc20350a
Cooper, 2014, A microdevice for rapid optical detection of magnetically captured rare blood pathogens, Lab Chip, 14, 182, 10.1039/C3LC50935D
Guan, 2010, Rapid detection of pathogens using antibody-coated microbeads with bioluminescence in microfluidic chips, Biomed. Microdevices, 12, 683, 10.1007/s10544-010-9421-6
Valiadi, 2016, Simple and rapid sample preparation system for the molecular detection of antibiotic resistant pathogens in human urine, Biomed. Microdevices, 18, 1, 10.1007/s10544-016-0031-9
Vinayaka, 2019, Rapid detection of Salmonella enterica in food samples by a novel approach with combination of sample concentration and direct PCR, Biosens. Bioelectron., 129, 224, 10.1016/j.bios.2018.09.078
Dhumpa, 2011, Rapid detection of avian influenza virus in chicken fecal samples by immunomagnetic capture reverse transcriptase-polymerase chain reaction assay, Diagn. Microbiol. Infect. Dis., 69, 258, 10.1016/j.diagmicrobio.2010.09.022
Lopes, 2016, Development of a magnetic separation method to capture sepsis associated bacteria in blood, J. Microbiol. Methods, 128, 96, 10.1016/j.mimet.2016.07.012
Wang, 2004, A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro, Nucleic Acids Res., 32, 1197, 10.1093/nar/gkh271
Pipper, 2007, Catching bird flu in a droplet, Nat. Med., 13, 1259, 10.1038/nm1634
Qiu, 2011, A portable, integrated analyzer for microfluidic - based molecular analysis, Biomed. Microdevices, 13, 809, 10.1007/s10544-011-9551-5
Hung, 2017, A novel lab-on-chip platform with integrated solid phase PCR and supercritical angle fluorescence (SAF) microlens array for highly sensitive and multiplexed pathogen detection, Biosens. Bioelectron., 90, 217, 10.1016/j.bios.2016.11.028
Shu, 2014, Segmented continuous-flow multiplex polymerase chain reaction microfluidics for high-throughput and rapid foodborne pathogen detection, Anal. Chim. Acta, 826, 51, 10.1016/j.aca.2014.04.017
Bian, 2015, A microfluidic droplet digital PCR for simultaneous detection of pathogenic Escherichia coli O157 and Listeria monocytogenes, Biosens. Bioelectron., 74, 770, 10.1016/j.bios.2015.07.016
Notomi, 2000, Loop-mediated isothermal amplification of DNA, Nucleic Acids Res., 28, E63, 10.1093/nar/28.12.e63
Seyrig, 2011, Simple, powerful, and smart: using LAMP for low-cost screening of multiple waterborne pathogens
Zhang, 2014, Brief review of monitoring methods for loop-mediated isothermal amplification (LAMP), Biosens. Bioelectron., 61, 491, 10.1016/j.bios.2014.05.039
Lubis, 2016, From market to food plate: current trusted technology and innovations in halal food analysis, Trends Food Sci. Technol., 58, 55, 10.1016/j.tifs.2016.10.024
Safavieh, 2016, Emerging loop-mediated isothermal amplification-based microchip and microdevice technologies for nucleic acid detection, ACS Biomater. Sci. Eng., 2, 278, 10.1021/acsbiomaterials.5b00449
Li, 2017, Loop-mediated isothermal amplification (LAMP): a novel rapid detection platform for pathogens, Microb. Pathog., 107, 54, 10.1016/j.micpath.2017.03.016
Oh, 2016, Centrifugal loop-mediated isothermal amplification microdevice for rapid, multiplex and colorimetric foodborne pathogen detection, Biosens. Bioelectron., 75, 293, 10.1016/j.bios.2015.08.052
Ahmed, 2016, A microfluidic lab-on-a-disc integrated loop mediated isothermal amplification for foodborne pathogen detection, Sensor. Actuator. B Chem., 227, 600, 10.1016/j.snb.2015.10.116
Tourlousse, 2012, A polymer microfluidic chip for quantitative detection of multiple water- and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification, Biomed. Microdevices, 14, 769, 10.1007/s10544-012-9658-3
Duarte, 2013, On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification, Biomed. Microdevices, 15, 821, 10.1007/s10544-013-9769-5
Sun, 2015, A lab-on-a-chip system with integrated sample preparation and loop-mediated isothermal amplification for rapid and quantitative detection of Salmonella spp. in food samples, Lab a Chip J. Name, 15, 1898, 10.1039/C4LC01459F
Liang, 2012, Multiplex loop-mediated isothermal amplification detection by sequence-based barcodes coupled with nicking endonuclease-mediated pyrosequencing, Anal. Chem., 84, 3758, 10.1021/ac3003825
Wang, 2017, Loop-mediated isothermal amplification label-based gold nanoparticles lateral flow biosensor for detection of Enterococcus faecalis and Staphylococcus aureus, Front. Microbiol., 8
Sun, 2017, Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone. 2017, IEEE Healthc. Innov. Point Care Technol, 241
Stedtfeld, 2014, DNA extraction-free quanti fi cation of dehalococcoides spp. in groundwater using a hand-held device, Environ. Sci. Technol., 48, 13855, 10.1021/es503472h
Kostić, 2015, Thirty-minute screening of antibiotic resistance genes in bacterial isolates with minimal sample preparation in static self-dispensing 64 and 384 assay cards, Appl. Microbiol. Biotechnol., 99, 10.1007/s00253-015-6774-z
Francois, 2011, Robustness of a loop-mediated isothermal amplification for diagnostic applications, FEMS Immunol. Med. Microbiol., 62, 41, 10.1111/j.1574-695X.2011.00785.x
Gotoh, 2013, Assessment of the loop-mediated isothermal amplification assay for rapid diagnosis of mycoplasma pneumoniae in pediatric community-acquired pneumonia, Jpn. J. Infect. Dis., 7, 539, 10.7883/yoken.66.539
Zhi, 2014, A novel HBV genotypes detecting system combined with microfluidic chip, loop-mediated isothermal amplification and GMR sensors, Biosens. Bioelectron., 55, 372, 10.1016/j.bios.2013.11.025
Zhang, 2013, Open-source 3D-printable optics equipment, PloS One, 8, 10.1371/journal.pone.0059840
Wayland, 2018, A cartesian coordinate robot for dispensing fruit fly, Food. J. Open Hardw., 2, 3, 10.5334/joh.9
Hannaford, 2013, Raven-II: an open platform for surgical robotics research, IEEE Trans. Biomed. Eng., 60, 954, 10.1109/TBME.2012.2228858
Nguyen, 2018, From Lab on a Chip to Point of Care Devices: the Role of Open Source Microcontrollers, Micromachines, 9, 403, 10.3390/mi9080403
Boehm, 1988, A spiral model of software development and enhancement, Computer (Long. Beach. Calif)., 21, 61
Mayhew, 1999
Andreasen, 2017
Lasersaur Lasersaur homepage.
Wittbrodt, 2013, Life-cycle economic analysis of distributed manufacturing with open-source 3-D printers, Mechatronics, 23, 713, 10.1016/j.mechatronics.2013.06.002
Carew, 2020
Shilpashree, 2015, Implementation of image processing on Raspberry Pi, Int. J. Adv. Res. Comput. Commun. Eng., 4, 199, 10.17148/IJARCCE.2015.4545
Nuñez, 2017, Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering, PloS One, 12, 10.1371/journal.pone.0187163
Lake, 2017, Low-cost feedback-controlled syringe pressure pumps for microfluidics applications, PloS One, 12, e0175089, 10.1371/journal.pone.0175089
Pardy, 2016, Modelling and experimental characterisation of thermoelectric heating for molecular diagnostics devices, 27
Maia Chagas, 2017, The €100 lab: a 3D-printable open-source platform for fluorescence microscopy, optogenetics, and accurate temperature control during behaviour of zebrafish, Drosophila, and Caenorhabditis elegans, PLoS Biol., 15, 1, 10.1371/journal.pbio.2002702
Bearinger, 2011, Development and initial results of a low cost, disposable, point-of-care testing device for pathogen detection, IEEE Trans. Biomed. Eng., 58, 805, 10.1109/TBME.2010.2089054
Lim, 2015, A lab-on-a-chip system integrating tissue sample preparation and multiplex RT-QPCR for gene expression analysis in point-of-care hepatotoxicity assessment, Lab Chip, 15, 4032, 10.1039/C5LC00798D
Nasseri, 2018, Point-of-Care microfluidic devices for pathogen detection, Biosens. Bioelectron., 117, 112, 10.1016/j.bios.2018.05.050
Obahiagbon, 2018, A compact, low-cost, quantitative and multiplexed fluorescence detection platform for point-of-care applications, Biosens. Bioelectron., 117, 153, 10.1016/j.bios.2018.04.002
Nikkhoo, 2016, Rapid bacterial detection via an all-electronic CMOS biosensor, PloS One, 11, 10.1371/journal.pone.0162438
Wang, 2018, Ultra low-cost, portable smartphone optosensors for mobile, Point-of-Care Diagnostics, 10486, 10486
Nguyen, 2019, A complete protocol for rapid and low-cost fabrication of polymer microfluidic chips containing three-dimensional microstructures used in point-of-care devices, Micromachines, 10, 624, 10.3390/mi10090624
Nguyen, 2019, Optimising the supercritical angle fluorescence structures in polymer microfluidic biochips for highly sensitive pathogen detection: a case study on Escherichia coli, Lab Chip, 19, 3825, 10.1039/C9LC00888H