Plant communities regulated by water-level gradient in Caohai aquatic–terrestrial ecotones affect bacterial and fungal structures and co-occurrence networks

Rhizosphere - Tập 25 - Trang 100674 - 2023
Mosheng Qiu1, Yiwei Wang1, Caili Sun1, Xiaoye Gao1, Xiaoyu Lu1
1College of Eco-Environmental Engineering, Guizhou Minzu University, Guiyang, 550025, China

Tài liệu tham khảo

Abarenkov, 2010, The UNITE database for molecular identification of fungi – recent updates and future perspectives, New Phytol., 186, 281, 10.1111/j.1469-8137.2009.03160.x Allison, 2007, Soil enzymes: linking proteomics and ecological process, 704 Banerjee, 2016, Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil, Soil Biol. Biochem., 97, 188, 10.1016/j.soilbio.2016.03.017 Bremner, 1982, 595 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303 Chen, 2016, Impacts of afforestation on plant diversity, soil properties, and soil organic carbon storage in a semi-arid grassland of northwestern China, Catena, 147, 300, 10.1016/j.catena.2016.07.009 Chen, 2019, Co-occurrence patterns between bacterial and fungal communities in response to a vegetation gradient in a freshwater wetland, Can. J. Microbiol., 65, 722, 10.1139/cjm-2019-0147 Chen, 2022, Soil microbial network complexity predicts ecosystem function along elevation gradients on the Tibetan Plateau, Soil Biol. Biochem., 172, 10.1016/j.soilbio.2022.108766 Cheng, 2021, Effects of disturbance to moss biocrusts on soil nutrients, enzyme activities, and microbial communities in degraded karst landscapes in southwest China, Soil Biol. Biochem., 152, 10.1016/j.soilbio.2020.108065 Cheng, 2008, The variation of soil temperature and water content of seasonal frozen soil with different vegetation coverage in the headwater region of the Yellow River, China, Environ. Geol., 54, 1755, 10.1007/s00254-007-0953-x Conrad, 2009, The global methane cycle: recent advances in understanding the microbial processes involved, Environ. Microbiol. Rep., 1, 285, 10.1111/j.1758-2229.2009.00038.x Cram, 2015, Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes, ISME J., 9, 2573, 10.1038/ismej.2015.76 de Boer, 2008, Rhizosphere bacteria from sites with higher fungal densities exhibit greater levels of potential antifungal properties, Soil Biol. Biochem., 40, 1542, 10.1016/j.soilbio.2007.12.030 de Vries, 2018, Soil bacterial networks are less stable under drought than fungal networks, Nat. Commun., 9, 3033, 10.1038/s41467-018-05516-7 de Vries, 2012, Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities, Ecol. Lett., 15, 1230, 10.1111/j.1461-0248.2012.01844.x Deng, 2011, Microplate fluorimetric assay of soil enzymes, 311 Deng, 2012, Molecular ecological network analyses, BMC Bioinf., 13, 113, 10.1186/1471-2105-13-113 Dornbush, 2007, Grasses, litter, and their interaction affect microbial biomass and soil enzyme activity, Soil Biol. Biochem., 39, 2241, 10.1016/j.soilbio.2007.03.018 Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604 Faust, 2012, Microbial interactions: from networks to models, Nat. Rev. Microbiol., 10, 538, 10.1038/nrmicro2832 Freilich, 2010, The large-scale organization of the bacterial network of ecological co-occurrence interactions, Nucleic Acids Res., 38, 3857, 10.1093/nar/gkq118 Hale, 2014, Scales that matter: guiding effective monitoring of soil properties in restored riparian zones, Geoderma, 228, 173, 10.1016/j.geoderma.2013.09.019 Hoffmann, 2006, Groundwater flow and transport of nutrients through a riparian meadow - field data and modelling, J. Hydrol., 331, 315, 10.1016/j.jhydrol.2006.05.019 Hu, 2018, Soil carbon, nitrogen, and phosphorus stoichiometry of three dominant plant communities distributed along a small-scale elevation gradient in the East Dongting Lake, Phys. Chem. Earth, Parts A/B/C, Biogeochem. Process. Chang. Wetl. Environ., 103, 28, 10.1016/j.pce.2017.04.001 Hu, 2020, Influence of different land use types on hydrochemistry and heavy metals in surface water in the lakeshore zone of the Caohai wetland, China, Environ. Pollut., 267, 10.1016/j.envpol.2020.115454 Huang, 2019, Enhanced hydrolysis-acidification of high-solids and low-organic-content sludge by biological thermal-alkaline synergism, Bioresour. Technol., 294, 10.1016/j.biortech.2019.122234 Kara, 2013, A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA, ISME J., 7, 680, 10.1038/ismej.2012.118 Kembel, 2010, Picante: R tools for integrating phylogenies and ecology, Bioinformatics, 26, 1463, 10.1093/bioinformatics/btq166 Lavorel, 2012, How fundamental plant functional trait relationships scale-up to trade-offs and synergies in ecosystem services, J. Ecol., 100, 128, 10.1111/j.1365-2745.2011.01914.x Li, 2015, Primary effects of extracellular enzyme activity and microbial community on carbon and nitrogen mineralization in estuarine and tidal wetlands, Appl. Microbiol. Biotechnol., 99, 2895, 10.1007/s00253-014-6187-4 Long, 2021, The response of microbial community structure and sediment properties to anthropogenic activities in Caohai wetland sediments, Ecotoxicol. Environ. Saf., 211, 10.1016/j.ecoenv.2021.111936 Long, 2022, Phosphatase phoD gene community changes organic phosphorus in sediment from Caohai plateau wetland, J. Soils Sediments, 22, 2317, 10.1007/s11368-022-03245-5 Lovley, 1998, Humic substances as a mediator for microbially catalyzed metal reduction, Acta Hydrochim. Hydrobiol., 26, 152, 10.1002/(SICI)1521-401X(199805)26:3<152::AID-AHEH152>3.0.CO;2-D Ma, 2018, Bacterial and fungal community composition and functional activity associated with lake wetland water level gradients, Sci. Rep., 8, 760, 10.1038/s41598-018-19153-z Merino, 2016, Soil enzymes and biological activity at different levels of organic matter stability, J. Soil Sci. Plant Nutr., 16, 14 Morrissey, 2014, Using microbial communities and extracellular enzymes to link soil organic matter characteristics to greenhouse gas production in a tidal freshwater wetland, Biogeochemistry, 117, 473, 10.1007/s10533-013-9894-5 Mougi, 2012, Diversity of interaction types and ecological community stability, Science, 337, 349, 10.1126/science.1220529 Murphy, 1962, A modified single solution method for the determination of phosphate in natural waters, Anal. Chim. Acta, 27, 31, 10.1016/S0003-2670(00)88444-5 Nelson, 1982, Total carbon, organic carbon and organic matter Olesen, 2007, The modularity of pollination networks, Proc. Natl. Acad. Sci. U. S. A., 104, 19891, 10.1073/pnas.0706375104 Olsen, 1982, Phosphorus, 403 Purahong, 2016, Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition, Mol. Ecol., 25, 4059, 10.1111/mec.13739 Qi, 2016, Temperature effects on soil organic carbon, soil labile organic carbon fractions, and soil enzyme activities under long-term fertilization regimes, Appl. Soil Ecol., 102, 36, 10.1016/j.apsoil.2016.02.004 Ren, 2022, Water level has higher influence on soil organic carbon and microbial community in Poyang Lake wetland than vegetation type, Microorganisms, 10, 131, 10.3390/microorganisms10010131 Schmidt-Mumm, 2016, Macrophyte assemblages in the aquatic-terrestrial transitional zone of oxbow lakes in the Danube floodplain (Austria), Folia Geobot., 51, 251, 10.1007/s12224-016-9234-3 Shi, 2016, The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages, Ecol. Lett., 19, 926, 10.1111/ele.12630 Sinsabaugh, 2012, Ecoenzymatic stoichiometry and ecological theory, vol. 43, 313 Spurgeon, 2013, Land-use and land-management change: relationships with earthworm and fungi communities and soil structural properties, BMC Ecol., 13, 46, 10.1186/1472-6785-13-46 Sun, 2022, Improvement of plant diversity along the slope of an historical Pb-Zn slag heap ameliorates the negative effect of heavy metal on microbial communities, Plant Soil, 473, 473, 10.1007/s11104-022-05299-3 Sun, 2022, Heavy metal pollution decreases the stability of microbial co-occurrence networks in the rhizosphere of native plants, Front. Environ. Sci., 10, 10.3389/fenvs.2022.979922 Totsche, 2018, Microaggregates in soils, J. Plant Nutr. Soil Sci., 181, 104, 10.1002/jpln.201600451 van der Heijden, 2016, A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment, ISME J., 10, 389, 10.1038/ismej.2015.120 Wang, 2019, The response of microbial composition and enzyme activities to hydrological gradients in a riparian wetland, J. Soils Sediments, 19, 4031, 10.1007/s11368-019-02373-9 Wang, 2007, Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261, 10.1128/AEM.00062-07 Weise, 2016, Water level changes affect carbon turnover and microbial community composition in lake sediments, FEMS Microbiol. Ecol., 92, fiw035, 10.1093/femsec/fiw035 Wu, 2016, Vertical distribution characteristics of soil organic carbon content in Caohai wetland ecosystem of Guizhou plateau, China, J. For. Res., 27, 551, 10.1007/s11676-015-0086-0 Xiao, 2017, Interactions of plant growth-promoting rhizobacteria and soil factors in two leguminous plants, Appl. Microbiol. Biotechnol., 101, 8485, 10.1007/s00253-017-8550-8 Yan, 2013, Quantitative effects of wind erosion on the soil texture and soil nutrients under different vegetation coverage in a semiarid steppe of northern China, Plant Soil, 369, 585, 10.1007/s11104-013-1606-3 Zhang, 2018, Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale, Soil Biol. Biochem., 118, 178, 10.1016/j.soilbio.2017.12.011 Zhang, 2021, Linking soil nutrient cycling and microbial community with vegetation cover in riparian zone, Geoderma, 384, 10.1016/j.geoderma.2020.114801 Zhou, 2011, Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2, mBio, 2, 10.1128/mBio.00122-11