Plant cell tracking using Kalman filter based local graph matching

Image and Vision Computing - Tập 60 - Trang 154-161 - 2017
Min Liu1, Yue He1, Yangliu Wei1, Peng Xiang1
1College of Electrical and Information Engineering, Hunan University, Hunan, China

Tài liệu tham khảo

Amat, 2014, Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data, Nat. Methods, 11, 951, 10.1038/nmeth.3036 Magnusson, 2015, Global linking of cell tracks using the Viterbi algorithm, IEEE Trans. Med. Imaging, 34, 911, 10.1109/TMI.2014.2370951 Santella, 2014, A semi-local neighborhood-based framework for probabilistic cell lineage tracing, BMC Bioinf., 15, 217, 10.1186/1471-2105-15-217 Chen, 2013, A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images, BMC Bioinf., 14, 10.1186/1471-2105-14-328 Chen, 2016, A probabilistic relaxation labeling (PRL) based method for C. elegans cell tracking in microscopic image sequences, IEEE J. Sel. Top. Sign. Proces., 10, 185, 10.1109/JSTSP.2015.2503924 Dzyubachyk, 2010, Advanced level-set-based cell tracking in time-lapse fluorescence microscopy, IEEE Trans. Med. Imaging, 29, 852, 10.1109/TMI.2009.2038693 Li, 2008, Cell population tracking and lineage construction with spatiotemporal context, Med. Image Anal., 12, 546, 10.1016/j.media.2008.06.001 Padfield, 2009, Spatio-temporal cell cycle phase analysis using level sets and fast marching methods, Med. Image Anal., 13, 143, 10.1016/j.media.2008.06.018 Dufour, 2005, Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces, IEEE Trans. Image Process., 14, 1396, 10.1109/TIP.2005.852790 Chui, 2000, A new algorithm for non-rigid point matching, Comput. Vis. Pattern Recognit., 44 Gor, 2005, Tracking cell signals in fluorescent images, 142 Hu, 2015, Deep metric learning for visual tracking, IEEE Trans. Circuits Syst. Video Technol. Fernandez, 2010, Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution, Nat. Methods, 7, 547, 10.1038/nmeth.1472 Lu, 2014, Neighborhood repulsed metric learning for kinship verification, IEEE Trans. Pattern Anal. Mach. Intell., 36, 331, 10.1109/TPAMI.2013.134 Lu, 2014, Human identity and gender recognition from gait sequences with arbitrary walking directions, IEEE Trans. Inf. Forensics Secur., 9, 51, 10.1109/TIFS.2013.2291969 Chakraborty, 2015, Context aware spatio-temporal cell tracking in densely packed multilayer tissues, Med. Image Anal., 19, 149, 10.1016/j.media.2014.09.008 Liu, 2010, Automated tracking of stem cell lineages of arabidopsis shoot apex using local graph matching, Plant J., 62, 135, 10.1111/j.1365-313X.2009.04117.x Liu, 2011, Adaptive cell segmentation and tracking for volumetric confocal microscopy images of a developing plant meristem, Mol. Plant, 4, 922, 10.1093/mp/ssr071 Ong, 2010, Tracking of cell population from time lapse and end point confocal microscopy images with multiple hypothesis Kalman smoothing filters, 71 Zhang, 2012, Robust multi-object tracking via cross-domain contextual information for sports video analysis, 985 Zheng, 2012, Quantifying and transferring contextual information in object detection, IEEE Trans. Pattern Anal. Mach. Intell., 34, 762, 10.1109/TPAMI.2011.164 Yan, 2014, Multi-task linear discriminant analysis for view invariant action recognition, IEEE Trans. Image Process., 23, 5599, 10.1109/TIP.2014.2365699 Song, 2010, A stochastic graph evolution framework for robust multi-target tracking, 605 Zhao, 2012, An MCMC-based particle filter for multiple target tracking, 1676 Abdullahi, 2014, Performance analysis of sequential Monte Carlo MCMC and PHD filters on multi-target tracking in video, 195 Mkrtchyan, 2011, Efficient cell segmentation and tracking of developing plant meristem, 2165 Dubuisson, 1994, A modified Hausdorff distance for object matching, 566 Qian, 2007, Target tracking using spatio-temporal Markov Chain Monte Carlo data association, Comput. Vis. Pattern Recognit., 1 Viola, 1997, Alignment by maximization of mutual information, Int. J. Comput. Vis., 24, 137, 10.1023/A:1007958904918 Duda, 2001 Zheng, 2015, Image segmentation by generalized hierarchical fuzzy C-means algorithm, J. Intell. Fuzzy Syst., 28, 961, 10.3233/IFS-141378 Li, 2015, Segmentation-based Image Copy-move Forgery Detection Scheme, IEEE Trans. Inf. Forensics Security., 10, 507, 10.1109/TIFS.2014.2381872 Xia, 2016, Steganalysis of LSB matching using differences between nonadjacent pixels, Multimedia Tools and Applications., 75, 1947, 10.1007/s11042-014-2381-8