Plant Growth Beyond Limits

Crow, 1998, 90 years ago: the beginning of hybrid maize, Genetics, 148, 923, 10.1093/genetics/148.3.923 Charlesworth, 2009, The genetics of inbreeding depression, Nat. Rev. Genet., 10, 783, 10.1038/nrg2664 Schnable, 2013, Progress toward understanding heterosis in crop plants, Annu. Rev. Plant Biol., 64, 71, 10.1146/annurev-arplant-042110-103827 Tester, 2010, Breeding technologies to increase crop production in a changing world, Science, 327, 818, 10.1126/science.1183700 Cabrera-Bosquet, 2012, High-throughput phenotyping and genomic selection: the frontiers of crop breeding converge, J. Integr. Plant Biol., 54, 312, 10.1111/j.1744-7909.2012.01116.x Palmgren, 2015, Are we ready for back-to-nature crop breeding?, Trends Plant Sci., 20, 155, 10.1016/j.tplants.2014.11.003 Hedden, 2003, The genes of the Green Revolution, Trends Genet., 19, 5, 10.1016/S0168-9525(02)00009-4 Ji, 2013, Genetic transformation of major cereal crops, Int. J. Dev. Biol., 57, 495, 10.1387/ijdb.130244kw Vainstein, 2011, Permanent genome modifications in plant cells by transient viral vectors, Trends Biotechnol., 29, 363, 10.1016/j.tibtech.2011.03.007 Zhang, 2013, Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching, Nat. Biotechnol., 31, 848, 10.1038/nbt.2646 Ikeda, 2013, Genes offering the potential for designing yield-related traits in rice, Curr. Opin. Plant Biol., 16, 213, 10.1016/j.pbi.2013.02.002 Lu, 2015, OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution, Plant J., 83, 913, 10.1111/tpj.12939 Liu, 2015, Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice, Proc. Natl. Acad. Sci. U.S.A., 112, 11102, 10.1073/pnas.1512748112 Li, 2015, OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice, J. Exp. Bot., 66, 5691, 10.1093/jxb/erv160 Nelson, 2007, Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres, Proc. Natl. Acad. Sci. U.S.A., 104, 16450, 10.1073/pnas.0707193104 Castiglioni, 2008, Bacterial RNA chaperones confer abiotic stress tolerance in plants and improved grain yield in maize under water-limited conditions, Plant Physiol., 147, 446, 10.1104/pp.108.118828 Habben, 2014, Transgenic alteration of ethylene biosynthesis increases grain yield in maize under field drought-stress conditions, Plant Biotechnol. J., 12, 685, 10.1111/pbi.12172 Nuccio, 2015, Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and drought conditions, Nat. Biotechnol., 33, 862, 10.1038/nbt.3277 Kalve, 2014, Leaf development: a cellular perspective, Front. Plant Sci., 5, 362, 10.3389/fpls.2014.00362 Rodriguez, 2014, Morphogenesis of simple leaves: regulation of leaf size and shape, Wiley Interdiscip. Rev. Dev. Biol., 3, 41, 10.1002/wdev.115 Li, 2015, Maternal control of seed size in plants, J. Exp. Bot., 66, 1087, 10.1093/jxb/eru549 Hisanaga, 2015, Compensation: a key to clarifying the organ-level regulation of lateral organ size in plants, J. Exp. Bot., 66, 1055, 10.1093/jxb/erv028 Kebeish, 2007, Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana, Nat. Biotechnol., 25, 593, 10.1038/nbt1299 Lin, 2014, A faster Rubisco with potential to increase photosynthesis in crops, Nature, 513, 547, 10.1038/nature13776 Storozhenko, 2007, Folate fortification of rice by metabolic engineering, Nat. Biotechnol., 25, 1277, 10.1038/nbt1351 Ye, 2000, Engineering the provitamin A (β-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm, Science, 287, 303, 10.1126/science.287.5451.303 Jonik, 2012, Simultaneous boosting of source and sink capacities doubles tuber starch yield of potato plants, Plant Biotechnol. J., 10, 1088, 10.1111/j.1467-7652.2012.00736.x Gonzalez, 2012, Leaf size control: complex coordination of cell division and expansion, Trends Plant Sci., 17, 332, 10.1016/j.tplants.2012.02.003 Hepworth, 2014, Regulation of plant lateral-organ growth by modulating cell number and size, Curr. Opin. Plant Biol., 17, 36, 10.1016/j.pbi.2013.11.005 Vanhaeren, 2015, A journey through a leaf: phenomics analysis of leaf growth in Arabidopsis thaliana, Arabidopsis Book, 13, e0181, 10.1199/tab.0181 Li, 2008, Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana, Genes Dev., 22, 1331, 10.1101/gad.463608 Xia, 2013, The ubiquitin receptor DA1 interacts with the E3 ubiquitin ligase DA2 to regulate seed and organ size in Arabidopsis, Plant Cell, 25, 3347, 10.1105/tpc.113.115063 Vanhaeren, 2014, Combining growth-promoting genes leads to positive epistasis in Arabidopsis thaliana, Elife, 3, e02252, 10.7554/eLife.02252 Pérez-Pérez, 2009, Understanding synergy in genetic interactions, Trends Genet., 25, 368, 10.1016/j.tig.2009.06.004 Disch, 2006, The E3 ubiquitin ligase BIG BROTHER controls Arabidopsis organ size in a dosage-dependent manner, Curr. Biol., 16, 272, 10.1016/j.cub.2005.12.026 Eloy, 2012, SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization, Proc. Natl. Acad. Sci. U.S.A., 109, 13853, 10.1073/pnas.1211418109 Cho, 2000, Altered expression of expansin modulates leaf growth and pedicel abscission in Arabidopsis thaliana, Proc. Natl. Acad. Sci. U.S.A., 97, 9783, 10.1073/pnas.160276997 Spartz, 2012, The SAUR19 subfamily of SMALL AUXIN UP RNA genes promote cell expansion, Plant J., 70, 978, 10.1111/j.1365-313X.2012.04946.x Baloban, 2013, Complementary and dose-dependent action of AtCCS52A isoforms in endoreduplication and plant size control, New Phytol., 198, 1049, 10.1111/nph.12216 Hou, 2013, SAUR36, a SMALL AUXIN UP RNA gene, is involved in the promotion of leaf senescence in Arabidopsis, Plant Physiol., 161, 1002, 10.1104/pp.112.212787 Hauben, 2009, Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield, Proc. Natl. Acad. Sci. U.S.A., 106, 20109, 10.1073/pnas.0908755106 Palatnik, 2003, Control of leaf morphogenesis by microRNAs, Nature, 425, 257, 10.1038/nature01958 Gonzalez, 2010, Increased leaf size: different means to an end, Plant Physiol., 153, 1261, 10.1104/pp.110.156018 Huang, 1998, Overexpression of 20-oxidase confers a gibberellin-overproduction phenotype in Arabidopsis, Plant Physiol., 118, 773, 10.1104/pp.118.3.773 Dewitte, 2003, Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3, Plant Cell, 15, 79, 10.1105/tpc.004838 Horiguchi, 2009, Impact of segmental chromosomal duplications on leaf size in the grandifolia-D mutants of Arabidopsis thaliana, Plant J., 60, 122, 10.1111/j.1365-313X.2009.03940.x Anastasiou, 2007, Control of plant organ size by KLUH/CYP78A5-dependent intercellular signaling, Dev. Cell, 13, 843, 10.1016/j.devcel.2007.10.001 Wu, 2015, CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice, Plant Biotechnol. J. Bhullar, 2003, Strategies for development of functionally equivalent promoters with minimum sequence homology for transgene expression in plants: cis-elements in a novel DNA context versus domain swapping, Plant Physiol., 132, 988, 10.1104/pp.103.020602 Lampropoulos, 2013, GreenGate – a novel, versatile, and efficient cloning system for plant transgenesis, PLoS ONE, 8, e83043, 10.1371/journal.pone.0083043 Karimi, 2013, Gateway vectors for transformation of cereals, Trends Plant Sci., 18, 1, 10.1016/j.tplants.2012.10.001 Engler, 2014, A golden gate modular cloning toolbox for plants, ACS Synth. Biol., 3, 839, 10.1021/sb4001504 Untergasser, 2012, One-step Agrobacterium mediated transformation of eight genes essential for rhizobium symbiotic signaling using the novel binary vector system pHUGE, PLoS ONE, 7, e47885, 10.1371/journal.pone.0047885 Hamilton, 1996, Stable transfer of intact high molecular weight DNA into plant chromosomes, Proc. Natl. Acad. Sci. U.S.A., 93, 9975, 10.1073/pnas.93.18.9975 Ainley, 2013, Trait stacking via targeted genome editing, Plant Biotechnol. J., 11, 1126, 10.1111/pbi.12107 Kumar, 2015, A modular gene targeting system for sequential transgene stacking in plants, J. Biotechnol., 207, 12, 10.1016/j.jbiotec.2015.04.006 Debernardi, 2014, Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity, Plant J., 79, 413, 10.1111/tpj.12567 Nelissen, 2012, A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division, Curr. Biol., 22, 1183, 10.1016/j.cub.2012.04.065 Oikawa, 2004, A role of OsGA20ox1, encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice, Plant Mol. Biol., 55, 687, 10.1007/s11103-004-1692-y Nelissen, 2015, Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf, Plant Cell, 27, 1605, 10.1105/tpc.15.00269 Vercruyssen, 2014, ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development, Plant Cell, 26, 210, 10.1105/tpc.113.115907 Ulmasov, 1997, Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements, Plant Cell, 9, 1963, 10.1105/tpc.9.11.1963 Spicer, 2013, Auxin-responsive DR5 promoter coupled with transport assays suggest separate but linked routes of auxin transport during woody stem development in Populus, PLoS ONE, 8, e72499, 10.1371/journal.pone.0072499 Gallavotti, 2008, The relationship between auxin transport and maize branching, Plant Physiol., 147, 1913, 10.1104/pp.108.121541 Dey, 2015, Synthetic promoters in planta, Planta, 242, 1077, 10.1007/s00425-015-2377-2 Brückner, 2015, A library of synthetic transcription activator-like effector-activated promoters for coordinated orthogonal gene expression in plants, Plant J., 82, 707, 10.1111/tpj.12843 Kumar, 2015, The CRISPR-Cas system for plant genome editing: advances and opportunities, J. Exp. Bot., 66, 47, 10.1093/jxb/eru429 Wang, 2014, Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew, Nat. Biotechnol., 32, 947, 10.1038/nbt.2969 Xing, 2014, A CRISPR/Cas9 toolkit for multiplex genome editing in plants, BMC Plant Biol., 14, 327, 10.1186/s12870-014-0327-y Qi, 2013, Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression, Cell, 152, 1173, 10.1016/j.cell.2013.02.022 Mahfouz, 2014, Genome engineering via TALENs and CRISPR/Cas9 systems: challenges and perspectives, Plant Biotechnol. J., 12, 1006, 10.1111/pbi.12256 Siuti, 2013, Synthetic circuits integrating logic and memory in living cells, Nat. Biotechnol., 31, 448, 10.1038/nbt.2510