Picocyanobacterial abundances and diversity in surface water of the northwestern Pacific Ocean
Tóm tắt
Từ khóa
Tài liệu tham khảo
Ahlgren NA, Rocap G (2006) Culture isolation and cultureindependent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies. Appl Environ Microbiol 72:7193–7204
Campbell L, Vaulot D (1993) Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (station ALOHA). Deep-Sea Res 40:2043–2060
Chen F, Wang K, Kan JJ, Suzuki MT, Wommack KE (2006) Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S–23S rRNA internal transcribed spacer sequences. Environ Microbiol 72:2239–2243
Choi DH, Noh JH (2009) Phylogenetic diversity of Synechococcus strains isolated from the East China Sea and the East Sea. FEMS Microbiol Ecol 69:439–448
Fuller NJ, Marie D, Partensky F, Vaulot D, Post AF, Scanlan DJ (2003) Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Environ Microbiol 69:2430–2443
Haverkamp T, Acinas SG, Doeleman M, Stomp M, Huisman J, Stal LJ (2008) Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons. Environ Microbiol 10:174–188
Huang S, Wilhelm SW, Harvey HR, Taylor K, Jiao N, Chen F (2011) Novel lineages of Prochlorococcus and Synechococcus in the global oceans. ISME J doi:10.1038/ismej.2011.106 (in Press)
Jenkins BD, Zehr JP, Gibson A, Campbell L (2006) Cyanobacterial assimilatory nitrate reductase gene diversity in coastal and oligotrophic marine environments. Environ Microbiol 8:2083–2095
Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EMS, Chisholm SW (2006) Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311:1737–1740
Lavin P, Gomez P, Gonzalez B, Ulloa O (2008) Diversity of the marine picocyanobacteria Prochlorococcus and Synechococcus assessed by terminal restriction fragment length polymorphisms of 16S–23S rRNA internal transcribed spacer sequences. Rev Chil Hist Nat 81:515–531
Lavin P, Gonzalez B, Santibanez JF, Scanlan DJ, Ulloa O (2010) Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific. Env Microbiol Rep 2:728–738
Li WKW (1994) Primary production of prochlorophytes, cyanobacteria, and eukaryotic ultraphytoplankton: Measurements from flow cytometric sorting. Limnol Oceanogr 39:169–175
Liu HB, Nolla HA, Campbell L (1997) Prochlorococcus growth rate and contribution to primary production in the equatorial and subtropical north pacific ocean. Aquat Microb Ecol 12: 39–47
Monger BC, Landry MR (1993) Flow cytometric analysis of marine bacteria with Hoechst 33342. Appl Environ Microbiol 59:905–911
Moore LR, Rocap G, Chisholm SW (1998) Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393:464–467
Mhling M, Fuller NJ, Somerfield PJ, Post AF, Wilson WH, Scanlan DJ et al. (2006) High resolution genetic diversity studies of marine Synechococcus isolates using rpoC1-based restriction fragment length polymorphism. Aquat Microb Ecol 45:263–275
Paerl RW, Foster RA, Jenkins BD, Montoya JP, Zehr JP (2008) Phylogenetic diversity of cyanobacterial narB genes from various marine habitats. Environ Microbiol 10:3377–3387
Partensky F, Hess WR, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63:106–127
Penno S, Lindell D, Post AF (2006) Diversity of Synechococcus and Prochlorococcus populations determined from DNA sequences of the N-regulatory gene ntcA. Environ Microbiol 8:1200–1211
Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S–23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68:1180–1191
Rusch DB, Martiny AC, Dupont CL, Halpern AL, Venter JC (2010) Characterization of Prochlorococcus clades from iron-depleted oceanic regions. Proc Natl Acad Sci 107: 16184–16189
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al. (2009) Introducing Mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541
Shannon CE, Weaver W (1949) The mathematical theory of communication. University of Illinois Press, Urbana, IL, 144 p
Somerville CC, Knight IT, Straube WL, Colwell RR (1989) Simple, rapid method for direct isolation of nucleic acids from aquatic environments. Appl Environ Microbiol 55:548–554
Toledo G, Palenik B (1997) Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains. Appl Environ Microbiol 63: 4298–4303
West NJ, Lebaron P, Strutton PG, Suzuki MT (2011) A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the south and Equatorial Pacific Ocean. ISME J 5:933–944
Zinser ER, Coe A, Johnson ZI, Martiny AC, Fuller NJ, Scanlan DJ, Chisholm SW (2006) Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl Environ Microbiol 72:723–732
Zwirglmaier K, Heywood JL, Chamberlain K, Woodward EMS, Zubkov MV, Scanlan DJ (2007) Basin-scale distribution patterns lineages in the Atlantic Ocean. Environ Microbiol 9: 1278–1290