Physics of Proteins at Low Temperature

Springer Science and Business Media LLC - Tập 137 - Trang 289-317 - 2004
Vladimir V. Ponkratov1, Josef Friedrich1, Jane M. Vanderkooi2, Alexander L. Burin3, Yuri A. Berlin4
1Physics Department E14 and Lehrstuhl für Physik Weihenstephan, Technische Universität München, D-853350 Freising, Germany
2Department of Biochemistry and Biophysics, USA
3Department of Chemistry, Tulane University, New Orleans, USA
4Department of Chemistry, Northwestern University, USA

Tóm tắt

We present results of a hole burning study with thermal cycling and waiting time spectral diffusion experiments on a modified cytochrome - c protein in its native as well as in its denatured state. The experiments show features which seem to be characteristic for the protein state of matter and its associated dynamics at low temperature. The properties responsible for the observed patterns are organisation paired with randomness and, in addition, the finite size which gives rise to surface and solvent effects. We discuss some general model approaches which might serve as guide lines for understanding these features.

Tài liệu tham khảo

H. Frauenfelder, F. Parak and R. D. Young, Annu. Rev. Biophys. Biophys. Chem. 17, 451 (1998).

H. Frauenfelder and P.G. Wolynes, Physics Today 47, 58 (1994).

K.A. Dill and H.S. Chan, Nat. Struct. Biol. 4, 10 (1997).

H. Frauenfelder, G.A. Pestsko and D. Tsernoglou, Nature 280, 558 (1979).

H. Hartmann, F. Parak, W. Steigemann G.A. Petsko, D.R. Ponzi and H. Frauenfelder, Procc. Natl. A cad. Sci. USA 70, 1967 (1982).

H. Frauenfelder, S.C. Sligar and P.G. Wolynes, Science 254, 1598 (1991).

Y. A. Berlin, S. F. Fischer, N. I. Chekunaev and V. I. Goldanskii, Chem. Phys. 200, 869 (1995).

C. Hofmann, H. Michel, T,J. Aartsma and I. Kochler, Proc. Nat. Acad. Sci. USA 100, 15534 (2003)

D. Thorn-Leeson, D. A. Wiersma, K.D. Fritsch and J. Friedrich, J. Phys. Chem. B 101, 6331 (1997).

A. E. Garcia, R. Blumenfeld, G. Hummer and J.A. Krumhansl, Physica D 107 , 225 (1997).

O. M. Becker and M. Karplus, J. Chem. Phys. 106, 1916 (1997)

E.T. Iben, D. Braunstein, W. Doster, H. Frauenfelder, M.K. Hong, J.B. Johnson, S. Luck, P. Ormos, A, Schulte, D.J. Steinbach, A. H. Xie and P.D. Young, Phys. Rev. Lett. 62, 1916 (1989).

J. Friedrich and D. Haarer, in Optical Spectroscopy of Classes, I. Zschokke, eds. (D. Reidel Publishing Company, Dordrecht, 1986)

W. Koehler, J. Zollfrank and J. Friedrich, Phys. Rev. B 39, 5414 (1989).

K.D. Fritsch and J. Friedrich, Physica D 107, 218 (1997).

J. Zollfrank, J. Priechich, J.M. Vanderkooi and J. Fidy, J.Chem. Phys. 95, 3134 (1991).

J.M. Vanderkooi and M. Erecinska, Eur. J. Biochem. 60, 199 (1975).

J.L. Skinner, J. Friudrich and I. SchlirlIter, J. Ph. Chem. A 103, 2310 (1999).

T.L Reinecke., Solid State Commun. 32, 1103 (1979).

B.M. Kharlamov and G. Zumofen, J. Chem. Phys. 116, 5107 (2002).

L. Kador, J. Luminescence 56, 165 (1993)

M. Koehler, J. Gafert, J. Friedrich, J.M. Vanderkooi and M. Laberge, Biophys. J. 71, 77 (1996).

W. Breinl, J. Friedrich and D. Ilaaer, J. Chem.Phys. 81, 3915 (1984)

K.A. Littau and M.D. Fayer, Chem. Phys. Lett. 176, 551 (1991).

J. Sedichter and J. Friedrich, J. Chem. Phys. 114, 8718 (2001).

V.Y. Ponkmtov, J. Friedrich, D. Markovic, H. Scheer and J.M. Vaderkooi, J. Phys. Chem. B, 108, 1109 (2004).

J. Schlichter, J. Friedrich, L. Herenyi and J. Fidy, J. Chem. Phys. 112, 3045 (2000).

V.Y. Ponkratov, J. Friedrich and J.M. Vanderkooi, J. Chem. Phys. 117, 4594 (2002).

W. Koehler and J. Friedrich, J. Chem. Phys. 90, 1270 (1989)

C. Singh, H.J. Schink, H.v. Loehneysen, F. Parak and S. Hunklinger, Z. Phys.B. 55, 23 (1984).

I.S. Yang and A.C. Anderson, Phys. Rev. B 34, 2942 (1986).

J. Schlichter and J. Friedrich, M. Parbel H. Scheer, Pho. Sci. News 6, 100 (2001).

J. Schlichter, J. Friedrich, M. Parbel and H. Scheer, J. Chem. Phys. 114, 9638 (2001).

J. Schlichter, V.V. Ponkratov and J. Friedrich, Fizika Nizkib Temp. 29, 1054 (2003).

J. Schlichter, J. Friedrich, L. Herenyi and J. Fidy, Biophys. J. 80, 2011 (2001).

T. Schlichter, J. Friedrich, L. Herenyi and T. Fidy, J.Phys. Chem. B 106, 3510 (2002).

Yu.A. Berlin and A.L. Burin, Chem. Phys. Letters 257, 665 (1996).

Yu.A. Berlin, A.L. Burin, L.D. Siebbeles and M.A. Ratner, J. Chem. Phys. A 105, 5666 (2001).

A.L. Burin, Yu. A. Berlin, A.Z. Patashinski, M.A. Ratner and J. Friedrich, Physica B 316-317, 321 (2002).

F.T.H. den Ilartog, C. van Papendrecht, U. Stoerkel and S. Voelker, J. Chem. Phys. B 103, 1375 (1999).

D. Vitkup, D. Ringe, G. Petsko and M. Karplus, Nat. Str. Biol. 7, 34 (2000).

W. Doster, S. Cusack and W. Petry, Nature 337, 754 (1989).

K. Fritsch, J. Friedrich and B.M. Kharlamov, J. Chem. Phys. 105, 1798 (1996)

D. J. Salvino, S. Rogge, B. Tigner and D. D. Osheroff, Phys. Rev. Lett. 73, 268 (1994).

A. L. Burin, J. Low Temp. Phys. 100, 309 (1995).

A.L. Burin, D. Natelson, D. D. Osheroff and Yu. Kagan, in Tunneling Systems in Amorphous Solids, Chapter 5, P. Esquinazi, eds. (Springer, 1908)

P. W. Anderson, B. I. Halperin and C. M. Warma, Philos. Mag. 25, 1 (1972); W. A. Phillips, J. Low Temp. Phys. 7, 351 (1072).

J. L. Black and B. I. Halperin, Phys. Rev. B 16, 2879 (1977).

S. Hunklinger and A. K. Raychaudhary, Progr. Low Temp. Phys. 9, 267 (1986).

Y. A. Berlin, A. L. Burin and S. F. Fischer, Chem. Phys. 220, 25 (1997).

P. Neu and A. Heuer J. Chem. Phys. 107, 8686 (1997).

A. Z, Patashinski, private communication.

Y. Kagan and L. A. Maksimov, Zh. Eksp. Teor. Fiz. 84, 792 (1983); Y. Kagan and L. A, Maksimov, Zh. Eksp.Teor. Fiz. 79, 1363 (1980).

V. B. Kokshenev, J. Low Temp. Phys. 20, 373 (1975)

I. S. Tupitsyn, N. V. Prokofev and P. C. E. Stamp, Int. J. Mod. Phys. B 11, 2901 (1997).

Yu. A. Berlin, A. L. Burin and V. I. Goldanskii, Z. Phys. 37, 333 (1996).

X. Li, D. Clarkson and H. Meyer, J. Low Temp. Phys. 78, 335 (1990).

R. Wunderlich, H. Maier, D. Haarer and B. M. Kharlamov, J. Phys. Chem. B 102, 10150 (1998).

A. Nittke, P. Esquinazi, H. C. Semmelhack, A. L. Burin and A. Z. Patashinkii, Eur. Phys. J. B 8, 19 (1999).

A. Nittke, P. Esquinazi and A. L. Burin, Phys. Rev. B 58, 5374 (1998).

S. K. Watson and R. O. Pohl, Phys. Rev. B 68, 104203 (2003).

N. V. Prokofev, I. S. Tupitsyn and A. L. Burin, unpublished.

P. Neu, R. J. Silbey, A. Heuer, S. J. Zilker and D. Haarer, J. Luminesc. 76, 619 (1998); H. Maier, B. M. Kharlamov and D, IIaaer, Phys. Rev. Lett. 76, 2085 (1996).

C. Scharnagl, to be published

B. Zelent, A.D, kaposi, N.V. Nucci, K.A. Sharp, S.D. Dalosto, W.W. Wrihgt and J. M. Vanderkooi, to be published.

Thông tin
Thông tin xuất bản

Springer Science and Business Media LLC

Tập 137

289-317

Thông tin tác giả