Phylogeography of northern Dolly Varden Salvelinus malma (Salmoniformes: Salmonidae) from Asia and North America: An analysis based on the mitochondrial DNA genealogy
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Avise, J.C., Phylogeography: The History and Formation of Species, Berendzen, P.B. and Simons A.M., Eds., Cambridge, Massachusetts: Harvard Univ. Press, 2000.
Bandelt, H.J., Forster, P., and Rohl, A., Median-joining networks for inferring intraspecific phylogenies, Mol. Biol. Evol., 1999, vol. 16, no. 1, pp. 37–48.
Behnke, R.J., Organizing the diversity of the Arctic charr complex, Biology of the Arctic Charr, Proc. Intern. Symp. Arctic Charr, Jonson, L. and Burns, B., Eds., Winnipeg: Univ. Manitoba Press, 1984, pp. 3–21.
Brigham-Grette, J., New perspectives on Beringian qaternary paleogeography, stratigraphy, and glacial history, Quatern. Sci. Rev., 2001, vol. 20, pp. 15–24.
Brunner, P.C., Douglas, M.R., Osinov, A., et al., Holarctic phylogeography of Arctic Charr (Salvelinus alpinus L.) inferred from mitochondrial DNA sequences, Evolution, 2001, vol. 55, no. 3, pp. 573–586.
Cann, R.L., Stoneking, M., and Wilson, A.C., Mitochondrial DNA and human evolution, Nature, 1987, vol. 325, no. 6099, pp. 31–36.
Chereshnev, I.A., Biologicheskoe raznoobrazie presnovodnoi ikhtiofauny severo-vostoka Rossii (Biological Diversity of Freshwater Fish Fauna in the Russian North-East), Vladivostok: Dal’nauka, 1996 (in Russian).
Chereshnev, I.A., Volobuev, V.V., Shestakov, A.V., and Frolov, S.V., Lososevidnye Ryby Severo-Vostoka Rossii (Salmonoid Fishes in Russian North-East), Chereshnev, I.A., Ed., Vladivostok: Dalnauka, 2002 (in Russian).
Churikov, D. and Gharrett, A.J., Comparative phylogeography of the two pink salmon broodlines: an analysis based on a mitochondrial DNA genealogy, Mol. Evol., 2002, vol. 11, no. 6, pp. 1077–1101.
Crane, P., DeCicco, A., Spearman, W., and Wenburg, J., Genetic Diversity of Dolly Varden Populations in Norton and Kotzebue Sounds, Anchorage: U.S. Fish and Wildlife Service, Office of Subsistence Management, Fisheries Resource Monitoring Program, Technical Report for Study 01-136, 2005.
Crandall, K.A. and Templeton, A.R., Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction, Genetics, 1993, vol. 134, no. 3, pp. 959–969.
Currens, K.P., Griswold, K.E., and Reeves, G.H., Relations between Dolly Varden Populations and between Coastal Cutthroat Trout Populations in Prince William Sound, Restoration Project 98145, Final Report, 2003.
DeCicco, A. and Reist, J., Distribution of dolly varden in Northern Bering and Chukchi Sea drainages, a provisional organization, ISACF Inform. Ser., 1999, no. 7, pp. 13–18.
Elz, A.E., A Hierarchical analysis of historical processes and phylogeographic patterns in Salvelinus (Pisces: Salmonidae), MSc Thesis, Vancouver: Univ. of British Columbia, Department of Zoology, 2003, p. 126; http://www.library.ubc.ca/spcoll/thesauth.html , 2012.
Everett, R.J., Wilmot, R.L., and Krueger, C.C., Population genetic structure of Dolly Varden from Beafourt Sea drainages of Northern Alaska and Canada, Amer. Fish. Soc. Symp., 1997, vol. 19, pp. 240–249.
Excoffier, L., Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model, Mol. Ecol., 2004, vol., 13, no. 4, pp. 853–864.
Excoffier, L. and Lischer, H.E.L., Arlequin suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Mol. Ecol. Res., 2010, vol. 10, no. 3, pp. 564–567.
Excoffier, L., Smouse, P.E., and Quattro, J.M., Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, Genetics, 1992, vol., 131, no. 2, pp. 479–491.
Frolov, S.V., Izmenchivost’ i evolyutsiya kariotipov lososevykh ryb (Karyotype Variability and Evolution in Salmonidae), Vladivostok: Dalnauka, 2000 (in Russian).
Frolov, S.V., Karyological differences and origin of Northern Dolly Varden of the Russian Far East, 5th Int. Charr Symp., 2006, p. 48; www.natkop.is/photos/5th-Int-Charr-Symp.pdf , 2013.
Fu, Y-X., Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection, Genetics, 1997, vol. 147, no. 2, pp. 915–925.
Gordeeva, N., Chukova, E., and Oleinik, A., Microsatellite genetic variation of asian populations of Dolly Varden Char, Hydrobiologia, 2010, vol. 650, no. 1, pp. 133–144.
Grewe, P.M., Billington, N., and Hebert, P.D.N., Phylogenetic relationships among members of Salvelinus inferred from mitochondrial DNA divergence, Can. J. Fish. Aquat. Sci., 1990, vol. 47, no. 5, pp. 984–991.
Harpending, R.C., Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution, Hum. Biol., 1994, vol. 66, no. 4, pp. 591–600.
Hewitt, G.M., Genetic consequences of climatic oscillations in the quaternary, Phil. Trans. Roy. Soc., Ser. B, 2004, vol. 359, no. 1442, pp. 183–195.
Hopkins, D.M., The paleogeography and climatic history of Beringia during late Cenozoic time, Inter-Nord., 1972, no. 12, pp. 121–150.
Lindberg, G.U., Krupnye kolebaniya urovnya okeana v Chetvertichnyi period (Large Fluctuations of the Ocean Level in the Quaternary), Leningrad: Nauka, 1972.
Mann, D.H. and Hamilton, T.D., Late Pleistocene and Holocene paleoenvironments of the North Pacific Coast, Quat. Sci. Rev., 1995, vol. 14, no. 5, pp. 449–471.
Morrow, J.E., Analysis of the Dolly Varden Charr, Salvelinus malma, of Northwestern North America and Northeastern Siberia, in Charrs: Salmonid Fishes of the Genus Salvelinus, Balon, E.K., Ed., Hague: Dr. W. Junk Publ., 1980, pp. 323–338.
Neigel, J.E., Ball, R.M., and Avise, J.C., Estimation of single generation migration distance from geographic variation in animal mitochondrial DNA, Evolution, 1991, vol. 45, no. 2, pp. 423–432.
Oleinik, A.G., Skurikhina, L.A., Frolov, S.V., et al., Differences between two subspecies of Dolly Varden, Salvelinus malma, revealed by RFLP-PCR analysis of mitochondrial DNA, Environ. Biol. Fishes, 2004, vol. 69, nos. 1–4, pp. 449–459.
Oleinik, A.G., Skurikhina, L.A., Brykov, Vl.A., et al., Differentiation of Dolly Varden Char Salvelinus malma from Asia and North America inferred from PCR-RFLP analysis of mitochondrial DNA, Russ. J. Genet., 2005, vol. 41, no. 5, pp. 501–508.
Oleinik, A.G., Skurikhina, L.A., and Brykov, Vl.A., Dolly Varden Charr: phylogeography, genetic differentiation and origin, based on PCR-RFLP analysis of mitochondrial DNA, in Computational Phylogenetics and Molecular Systematics “CPMS’2007,” Antonov, A.S., Ed., Moscow: KMK Scientific Press, 2007, pp. 226–228.
Oleinik, A.G., Skurikhina, L.A., and Brykov, Vl.A., Population genetic structure of Northern Dolly Varden Char Salvelinus malma malma in Asia and North America, Russ. J. Genet., 2011, vol. 47, no. 11, pp. 1456–1467.
Osinov, A.G., Northern form of Dolly Varden Salvelinus malma from Asia and North America: allozyme variation, genetic differentiation, and origin, J. Ichthyol., 2002, vol. 42, no. 5, pp. 664–677.
Osinov, A.G. and Pavlov, S.D., Allozyme variation and genetic divergence of populations of Arctic Char and Dolly Varden (Salvelinus alpinus-S. malma complex), J. Ichthyol., 1998, vol. 38, no. 1, pp. 47–61.
Pielou, E.C., After the Ice Age: The Return of Life to Glaciated North America, Chicago: Univ. Chicago Press, 1991.
Posada, D., Crandall, K.A., and Templeton, A.R., GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes, Mol. Ecol., 2000, vol. 9, no. 4, pp. 487–488.
Chetvertichnye oledeneniya na territorii SSSR (Osnovnye itogi issledovanii rabochei gruppy proekta 24 MPGK “Chetvertichnye oledeneniya Severnogo polushariya”) (Quaternary Glaciations on the Territory of the USSR (Main Results of Project 24 MPGK Workgroup “Quaternary Glaciations in the Northern Hemisphere”)), Velichko, A.A., et al., Eds., Moscow: Nauka, 1987.
Redenbach, Z. and Taylor, E.B., Evidence for historical introgression along a contact zone between two species of Char (Pisces: Salmonidae) in Northwestern North America, Evolution, 2002, vol. 56, no. 5, pp. 1021–1035.
Reist, J.D., Johnson, J.D., and Carmichael, T.J., Variation and specific identity of Char from Northwestern Arctic Canada and Alaska, Amer. Fish. Soc. Symp., 1997, vol. 19, pp. 250–261.
Roff, D. and Bentzen, P., The statistical analysis of mitochondrial DNA polymorphisms: chi-square and the problem of small samples, Mol. Biol. Evol., 1989, vol. 6, no. 5, pp. 539–545.
Slatkin, M. and Hudson, R.R., Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations, Genetics, 1991, vol. 129, no. 2, pp. 555–562.
Shafer, A.A., Cullingham, C.I., Côté, S.D., and Coltman, D.W., Of glaciers and refugia: a decade of study sheds new light on the phylogeography of Northwestern North America, Mol. Ecol., 2010, vol. 19, no. 21, pp. 4589–4621.
Smith, G.R., Introgression in fishes: significance for paleontology, cladistics, and evolutionary rates, Syst. Biol., 1992, vol. 41, no. 1, pp. 41–57.
Stamford, M.D. and Taylor, E.B., Phylogeographical lineages of arctic grayling (Thymallus arcticus) in North America: divergence, origins, and affinities with eurasian Thymallus, Mol. Ecol., 2004, vol. 13, no. 6, pp. 1533–1549.
Taylor, E.B., Lowery, E., Liliestrale, A., et al., Genetic analysis of sympatric char populations in Western Alaska: Arctic Char (Salvelinus alpinus) and Dolly Varden (Salvelinus malma) are not two sides of the same coin, J. Evol. Biol., 2008, vol. 21, no. 6, pp. 1609–1625.
Templeton, A.R., Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history, Mol. Ecol., 1998, vol. 7, no. 4, pp. 381–398.
Templeton, A.R., Statistical phylogeography: methods of evaluating and minimizing inference errors, Mol. Ecol., 2004, vol. 13, no. 4, pp. 789–809.
Templeton, A.R., Nested clade analysis: an extensively validated method for strong phylogeographic inference, Mol. Ecol., 2008, vol. 17, no. 8, pp. 1877–1880.
Templeton, A.R. and Sing, C.F., A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping, IV: nested analysis with cladogram uncertainty and recombination, Genetics, 1993, vol. 134, no. 2, pp. 659–669.
Templeton, A.R., Boerwinkle, E., and Sing, C.F., A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping, I: Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila, Genetics, 1987, vol. 117, no. 2, pp. 343–351.
Templeton, A.R., Routman, E., and Phillips, C.A., Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambistoma tigrinum, Genetics, 1995, vol. 140, no. 2, pp. 767–782.
Weir, B.S. and Cockerham, C.C., Estimating F-statistics for the analysis of population structure, Evolution, 1984, vol. 38, no. 6, pp. 1358–1370.