Phylogenetic placement ofAthelia bombacina, Aureobasidium pullulans, andColletotrichum gloeosporioides inferred from sequence comparisons of small-subunit ribosomal RNAs

Experimental Mycology - Tập 15 - Trang 65-75 - 1991
Charles A. Illingworth1, John H. Andrews1, Claude Bibeau2, Mitchell L. Sogin2
1Department of Plant Pathology, University of Wisconsin, Madison, Wisconsin 53706
2Marine Biological Laboratory, Woods Hole, Massachusetts 02543

Tài liệu tham khảo

Andrews, 1983, Microbial antagonism to the imperfect stage of the apple scab pathogen,Venturia inaequalis, Phytopathology, 73, 228, 10.1094/Phyto-73-228 Andrews, 1978, The effects of a pesticide program on non-target epiphytic microbial populations of apple leaves, Canad. J. Microbiol., 24, 1058, 10.1139/m78-175 Andrews, 1979, The effects of a pesticide program on non-target microbial populations from apple leaf litter, Canad. J. Microbiol., 25, 1331, 10.1139/m79-211 Barns, 1991, Evolutionary relationships among pathogenicCandida species and relatives, J. Bacteriol., 10.1128/jb.173.7.2250-2255.1991 Bennett, 1928, OnDematium pullulans and its ascigerous state, Ann. Appl. Biol., 5, 371, 10.1111/j.1744-7348.1928.tb07061.x Daniel, 1973, Biological control of northern jointvetch in rice with an endemic fungal disease, Weed Sci., 21, 303, 10.1017/S0043174500027041 DeLong, 1989, Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells, Science, 243, 1360, 10.1126/science.2466341 Edman, 1988, Ribosomal RNA sequence showsPneumocystis carinii to be a member of the fungi, Nature (London), 334, 519, 10.1038/334519a0 Elwood, 1985, The small-subunit ribosomal RNA gene sequences from hypotrichous ciliatesOxytricha nova andStylonychia pustulata, Mol. Biol. Evol., 2, 399 Fitch, 1976, Construction of phylogenetic trees, Science, 155, 279, 10.1126/science.155.3760.279 Forster, 1990, Mitochondrial and nuclear DNA diversity within six species ofPhytophthora, Exp. Mycol., 14, 18, 10.1016/0147-5975(90)90083-6 Forster, 1990, Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution, Mycologia, 82, 306, 10.2307/3759901 Gadd, 1984, Strain and medium-related variability in the yeast-mycelial transition ofAureobasidium pullulans, FEMS Microbiol. Lett., 23, 47, 10.1111/j.1574-6968.1984.tb01033.x Gobel, 1987, Oligonucleotide probes complementary to variable regions of ribosomal RNA discriminate betweenMycoplasma species, J. Gen. Microbiol., 133, 1969 Guadet, 1989, Phylogeny of someFusarium species, as determined by large-subunit rRNA sequence comparison, Mol. Biol. Evol., 6, 227 Gunderson, 1987, Phylogenetic relationships between chlorophytes, chrysophytes and oomycetes, 84, 5823 Heim, 1948, Phylogeny and natural classification of macro-fungi, Trans. Brit. Mycol. Soc., 30, 161, 10.1016/S0007-1536(48)80045-8 Hendriks, 1989, The nucleotide sequence of the small ribosomal subunit RNA of the yeastCandida albicans and the evolutionary position of the fungi among the eukaryotes, Syst. Appl. Microbiol., 12, 223, 10.1016/S0723-2020(89)80066-9 Hermanides-Nijhof, 1977, Aureobasidium and allied genera, 141 Heye, 1983, Antagonism ofAthelia bombacina andChaetomium globosum to the apple scab pathogen,Venturia inaequalis, Phytopathology, 73, 650, 10.1094/Phyto-73-650 Hudson, 1965, An ascomycete withAureobasidium pullulans-type conidia, Nova Hedwigia, 10, 319 Hughes, 1953, Conidiophores, conidia and classification, Canad. J. Bot., 31, 577, 10.1139/b53-046 Huss, 1990, Phylogenetic position of someChlorella species within the Chlorococcales based upon complete small subunit ribosomal RNA sequences, J. Mol. Biol. Evol., 131, 432, 10.1007/BF02106057 Jukes, 1969, Evolution of protein molecules, 21 Kelman, 1967 1979, Vols. 1 and 2 Kendrick, 1981, The systematics of Hyphomycetes, Vol. 1, 21 1984 Lin, 1978, Induction of a biopolyester hydrolase (cutinase) by low levels of cutin monomers inFusarium solani f. sp.pisi, J. Bacteriol., 133, 942, 10.1128/JB.133.2.942-951.1978 Maniatis, 1982 Margulis, 1988 McCarroll, 1983, Nucleotide sequence of theDictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: Evolutionary implications, Biochemistry, 22, 5858, 10.1021/bi00294a027 Medlin, 1988, The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions, Gene, 71, 491, 10.1016/0378-1119(88)90066-2 Messing, 1983, New M13 vectors for cloning, Vol. 101, 20 Messing, 1984, Cloning and sequencing of the ribosomal RNA genes in maize: The 17S region, DNA, 3, 31, 10.1089/dna.1.1984.3.31 Mullis, 1987, Specific synthesis of DNA in vitro via a polymerasecatalyzed chain reaction, Vol. 155, 335 Nairn, 1988, The complete nucleotide sequence of the small-subunit ribosomal RNA coding region for the cycadZamia pumila: Phylogenetic implications, J. Mol. Evol., 27, 133, 10.1007/BF02138373 Nelles, 1984, Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs, Nucleic Acids Res., 12, 8749, 10.1093/nar/12.23.8749 Olsen, 1986, Microbial ecology and evolution: A ribosomal approach, Annu. Rev. Microbiol., 40, 337, 10.1146/annurev.mi.40.100186.002005 Rubstov, 1980, The structure of the yeast ribosomal RNA gene. I. The complete nucleotide sequence of the 18S ribosomal RNA gene fromSaccharomyces cerevisiae, Nucleic Acids Res., 8, 5779, 10.1093/nar/8.23.5779 Saiki, 1988, Primer-directed enzymatic amplification of DNA with thermostable DNA polymerase, Science, 239, 487, 10.1126/science.2448875 Sanger, 1975, A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase, J. Mol. Biol., 94, 441, 10.1016/0022-2836(75)90213-2 Smith, 1989, Pathogenicity of the fungusColletotrichum gloeosporioides (Penz.) Sacc. to Eurasian watermilfoil (Myriophyllum spicatum L.), Aquat. Bot., 33, 1, 10.1016/0304-3770(89)90016-8 Smith, 1989, Disparate evolution of yeasts and filamentous fungi indicated by phylogenetic analysis of glyceraldehyde-3-phosphate dehydrogenase genes, 86, 7063 Sogin, 1986, Primary structure of theParamecium tetraurelia small subunit rRNA coding region: Phylogenetic relationships within the Ciliophora, J. Mol. Evol., 23, 53, 10.1007/BF02100998 Sogin, 1987, Structural diversity of eukaryotic small subunit ribosomal RNAs: Evolutionary implications, Endocytobiology III. Ann. N.Y. Acad. Sci., 503, 125, 10.1111/j.1749-6632.1987.tb40603.x Sogin, 1989, Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA fromGiardia lamblia, Nature (London), 243, 75 Sogin, 1986, Phylogenetic evidence for the acquisition of rRNA introns subsequent to the divergence of some of the majorTetrahymena groups, EMBO J., 15, 3625, 10.1002/j.1460-2075.1986.tb04691.x Sogin, 1986, Primary structure of theNeurospora crassa small subunit ribosomal RNA coding region, Nucleic Acids Res., 23, 9540, 10.1093/nar/14.23.9540 Specht, 1982, A method for extracting high-molecular-weight deoxynucleic acid from fungi, Anal. Biochem., 119, 158, 10.1016/0003-2697(82)90680-7 Stahl, 1988, Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology, Appl. Environ. Microbiol., 54, 1079, 10.1128/AEM.54.5.1079-1084.1988 Torczynski, 1985, Cloning and sequencing of a human 18S ribosomal RNA gene, DNA, 4, 283, 10.1089/dna.1985.4.283 Ward, 1990, 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community, Nature (London), 345, 63, 10.1038/345063a0 Woese, 1987, Bacterial evolution, Microbiol. Rev., 51, 221, 10.1128/MMBR.51.2.221-271.1987 Zuckerkandl, 1965, Molecules as documents of evolutionary history, J. Theor. Biol., 8, 357, 10.1016/0022-5193(65)90083-4