Phylogenetic diversity of bacteria in the Arctic Ocean sediments neighboring the Bering Strait

Acta Ecologica Sinica - Tập 38 - Trang 356-362 - 2018
Zheng Zhang1, Xiaoqian Gu1, Liang Zhang1, Xuezheng Lin1
1Key Lab of Marine Bioactive Substances, the First Institute of Oceanography, SOA, Qingdao 266061, China

Tài liệu tham khảo

Chen, 2003, The sources of the upper and lower halocline water in the Canada Basin derived from isotopic tracers, Sci. China Ser. D Earth Sci., 46, 625, 10.1360/03yd9055 Li, 2005, The fundamental characteristics of current in the Bering Strait and the Chukchi Sea from July to September 2003, Acta Oceanol. Sin., 24, 1 Nishimura, 2012, Iron, nutrients, and humic-type fluorescent dissolved organic matter in the northern Bering Sea shelf, Bering Strait, and Chukchi Sea, J. Geophys. Res. Atmos., 117, 79, 10.1029/2011JC007355 Cooper, 2009, Seasonal and decadal shifts in particulate organic matter processing and sedimentation in Bering Strait shelf region, Deep Sea Res., Part II, 56, 1316, 10.1016/j.dsr2.2008.10.025 Dong, 2014, Mineralogical study of surface sediments in the western Arctic Ocean and their implications for material sources, Adv. Polym. Sci., 25, 192 Zinger, 2011, Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems, PLoS One, 6, 10.1371/journal.pone.0024570 Finlay, 2002, Global dispersal of free-living microbial eukaryote species, Science, 296, 1061, 10.1126/science.1070710 Ramette, 2007, Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution, Microb. Ecol., 53, 197, 10.1007/s00248-005-5010-2 Székely, 2014, The importance of species sorting differs between habitat generalists and specialists in bacterial communities, FEMS Microbiol. Ecol., 87, 102, 10.1111/1574-6941.12195 Galand, 2010, Hydrography shapes bacterial biogeography of the deep Arctic Ocean, ISME J., 4, 564, 10.1038/ismej.2009.134 Hamdan, 2013, Ocean currents shape the microbiome of Arctic marine sediments, ISME J., 7, 685, 10.1038/ismej.2012.143 Han, 2014, Bacterial communities of surface mixed layer in the Pacific sector of the western Arctic Ocean during sea-ice melting, PLoS One, 9, 10.1371/journal.pone.0086887 Sapp, 2010, Advancing the understanding of biogeography diversity relationships of benthic microorganisms in the North Sea, FEMS Microbiol. Ecol., 74, 410, 10.1111/j.1574-6941.2010.00957.x Jacob, 2013, Biogeography of deep-sea benthic bacteria at regional scale (Lter Hausgarten, Fram Strait, Arctic), PLoS One, 8, 10.1371/journal.pone.0072779 Kumar, 2011, Target region selection as a critical determinant of community fingerprints generated by 16S pyrosequencing, PLoS One, 6, 10.1371/journal.pone.0020956 Zeng, 2013, Bacterioplankton community structure in the Arctic waters as revealed by pyrosequencing of 16S rRNA genes, Antonie Van Leeuwenhoek, 103, 1309, 10.1007/s10482-013-9912-6 Wu, 2012, Composition, diversity, and origin of the bacterial community in grass carp intestine, PLoS One, 7, 10.1371/journal.pone.0030440 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303 Schloss, 2011, Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies, PLoS One, 6, 10.1371/journal.pone.0027310 Quast, 2013, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res., 41, D590, 10.1093/nar/gks1219 Lozupone, 2005, UniFrac: a new phylogenetic method for comparing microbial communities, Appl. Environ. Microbiol., 71, 8228, 10.1128/AEM.71.12.8228-8235.2005 Ter Braak, 1986, Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis, Ecology, 67, 1167, 10.2307/1938672 Whitman, 1998, Prokaryotes: the unseen majority, PNAS, 95, 6578, 10.1073/pnas.95.12.6578 Trevors, 2010, Microbial diversity across a Canadian sub-Arctic, isostatically rebounding, soil transect, Polar Sci., 4, 81, 10.1016/j.polar.2008.06.001 Walsh, 1991, Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen, Nature, 350, 53, 10.1038/350053a0 Liu, 2003, Molecular diversity of sulfate-reducing bacteria from two different continental margin habitats, Appl. Environ. Microbiol., 69, 6073, 10.1128/AEM.69.10.6073-6081.2003 Jorgensen, 2012, Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge, PNAS, 109, E2846, 10.1073/pnas.1207574109 Nguyen, 2015, Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor, Front. Microbiol., 6 Bienhold, 2012, The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments, ISME J., 6, 724, 10.1038/ismej.2011.140 Tian, 2008, Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis, Polar Biol., 32, 93, 10.1007/s00300-008-0509-x Zeng, 2011, Phylogenetic diversity of sediment bacteria in the northern Bering Sea, Polar Biol., 34, 907, 10.1007/s00300-010-0947-0 Glöckner, 1999, Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization, Appl. Environ. Microbiol., 65, 3721, 10.1128/AEM.65.8.3721-3726.1999 Wang, 2014, Diversity analysis of culturable bacteria isolated from marine sediments of Arctic, Acta Oceanol. Sin., 36, 116 Zinger, 2014, Bacterial taxa-area and distance-decay relationships in marine environments, Mol. Ecol., 23, 954, 10.1111/mec.12640 Purdy, 2003, Analysis of the sulfate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments, Appl. Environ. Microbiol., 69, 3181, 10.1128/AEM.69.6.3181-3191.2003 Jungbluth, 2014, Phylogenetic diversity of microorganisms in subseafloor crustal fluids from Holes1025C and 1026B along the Juan de Fuca Ridge flank, Front. Microbiol., 5, 119 Buttigieg, 2014, Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait), Front. Microbiol., 5, 660 Wang, 2016, Diversity and composition of bacterial community in soils and lake sediments from an Arctic lake area, Front. Microbiol., 7, 541, 10.3389/fmicb.2016.01170 Lionard, 2012, Benthic cyanobacterial mats in the high arctic: multi-layer structure and fluorescence responses to osmotic stress, Front. Microbiol., 26, 140 Saghaï, 2015, Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites, Front. Microbiol., 6, 797, 10.3389/fmicb.2015.00797