Phylogenetic diversity of bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llonín and La Garma)

FEMS Microbiology Ecology - Tập 47 - Trang 235-247 - 2004
Claudia Schabereiter-Gurtner1, Cesareo Saiz-Jimenez2, Guadalupe Piñar1, Werner Lubitz1, Sabine Rölleke1
1Institut für Mikrobiologie und Genetik, Universität Wien, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria
2Instituto de Recursos Naturales y Agrobiologia, CSIC, Apartado 1052, 41080 Sevilla, Spain

Tài liệu tham khảo

Hose, 2000, Microbiology and geochemistry in a hydrogen-sulphide-rich karst environment, Chem. Geol., 169, 399, 10.1016/S0009-2541(00)00217-5 Sarbu, 1996, A chemoautotrophically based cave ecosystem, Science, 272, 1953, 10.1126/science.272.5270.1953 Groth, 1999, Actinomycetes in hypogean environments, Geomicrobiol. J., 16, 1, 10.1080/014904599270703 Groth, 1999, Actinomycetes in karstic caves of northern Spain (Altamira and Tito Bustillo), J. Microbiol. Methods, 36, 115, 10.1016/S0167-7012(99)00016-0 Groth, 2001, Geomicrobiological study of the Grotta dei Cervi, Porto Badisco, Italy, Geomicrobiol. J., 18, 241, 10.1080/01490450152467778 Cunningham, 1995, Bacteria, fungi and biokarst in Lechuguilla Cave, Carlsbad Caverns National Park, New Mexico, Environ. Geol., 25, 2, 10.1007/BF01061824 Laiz, 1999, Microbiological study of the dripping water in Altamira Cave (Santillana del Mar, Spain), J. Microbiol. Methods, 36, 129, 10.1016/S0167-7012(99)00018-4 Somavilla, 1978, A comparative study of the microorganisms present in the Altamira and La Pasiega Caves, Int. Biodeter. Bull., 14, 103 Vlasceanu, 2000, Acidic cave-wall biofilms located in the Frasassi Gorge, Italy, Geomicrobiol. J., 17, 125, 10.1080/01490450050023809 Cañaveras, 2001, Microorganisms and microbially induced fabrics in cave walls, Geomicrobiol. J., 18, 223, 10.1080/01490450152467769 Northup, 2001, Geomicrobiology of caves, Geomicrobiol. J., 18, 199, 10.1080/01490450152467750 Gonzalez, 1999, Microbial communities of the rock paintings of Atlanterra shelter (South Spain), J. Microbiol. Methods, 36, 123, 10.1016/S0167-7012(99)00017-2 Karpovich-Tate, 1990, Microbial communities on damaged frescoes and building materials in the cathedral of the nativity of the virgin in the Pafnutii-Borovskii monastery, Russia, Int. Biodeter., 27, 281, 10.1016/0265-3036(91)90057-X Pethuskova, 1986, Microbiological degradation of lead-containing pigments in mural paintings, Stud. Conserv., 31, 65 Amann, 1995, Phylogenetic identification and in situ detection of individual microbial cells without cultivation, Microbiol. Rev., 59, 143, 10.1128/MMBR.59.1.143-169.1995 Head, 1998, Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms, Microb. Ecol., 35, 1, 10.1007/s002489900056 Hugenholtz, 1998, Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity, J. Bacteriol., 180, 4765, 10.1128/JB.180.18.4765-4774.1998 Muyzer, 1993, Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol., 59, 695, 10.1128/AEM.59.3.695-700.1993 Laiz, 2000, Microbiology of the stalactites from Grotta dei Cervi, Porto Badisco, Italy, Int. Microbiol., 3, 25 Engel, 2001, Ecological assessment and geological significance of microbial communities from Cesspool Cave, Virginia, Geomicrobiol. J., 18, 259, 10.1080/01490450152467787 Holmes, 2001, Phylogenetic structure of unusual aquatic microbial formations in Nullarbor Caves, Australia, Environ. Microbiol., 3, 256, 10.1046/j.1462-2920.2001.00187.x Northup, 2000, Evidence for geomicrobiological interactions in Guadalupe Caves, J. Caves Karst Stud., 62, 80 Gurtner, 2000, Comparative analyses of the bacterial diversity on two different biodeteriorated wall paintings by DGGE and 16S rDNA sequence analysis, Int. J. Biodeterior. Biodegrad., 46, 229, 10.1016/S0964-8305(00)00079-2 Rölleke, 1996, Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA, Appl. Environ. Microbiol., 62, 2059, 10.1128/AEM.62.6.2059-2065.1996 Schabereiter-Gurtner, 2001, An advanced molecular strategy to identify bacterial communities on art objects, J. Microbiol. Methods, 45, 77, 10.1016/S0167-7012(01)00227-5 Schabereiter-Gurtner, 2001, Rubrobacter-related bacteria associated with rosy discoloration of masonry and lime wall paintings, Arch. Microbiol., 176, 347, 10.1007/s002030100333 Schabereiter-Gurtner, 2002, Altamira Cave Paleolithic paintings harbour partly unknown bacterial communities, FEMS Microbiol. Lett., 211, 7, 10.1111/j.1574-6968.2002.tb11195.x Schabereiter-Gurtner, 2002, Phylogenetic 16S rRNA analysis reveals the presence of complex and partly unknown bacterial communities in Tito Bustillo Cave, Spain, and on its Paleolithic paintings, Environ. Microbiol., 4, 392, 10.1046/j.1462-2920.2002.00303.x Middendorf, 1992, Continuous, on-line DNA sequencing using a versatile infrared laser scanner/electrophoresis apparatus, Electrophoresis, 13, 487, 10.1002/elps.11501301103 Pearson, 1994, Rapid and sensitive sequence comparison with FAST and FASTA, Methods Enzymol., 183, 63, 10.1016/0076-6879(90)83007-V Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Derakshani, 2001, Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms, Appl. Environ. Microbiol., 67, 623, 10.1128/AEM.67.2.623-631.2001 Dojka, 1998, Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation, Appl. Environ. Microbiol., 64, 3869, 10.1128/AEM.64.10.3869-3877.1998 Bowman, 2000, Diversity and community structure within anoxic sediment from marine salinity meromictic lakes and a coastal meromictic marine basin, Vestfold Hilds, Eastern Antarctica, Environ. Microbiol., 2, 227, 10.1046/j.1462-2920.2000.00097.x Ludwig, 1997, Detection and in situ identification of representatives of a widely distributed new bacterial phylum, FEMS Microbiol. Lett., 153, 181, 10.1111/j.1574-6968.1997.tb10480.x Andrejchuk, 2001, Geomicrobiology and redox geochemistry of the karstified miocene gypsum aquifer, western Ukraine: The study from Zoloushka Cave, Geomicrobiol. J., 18, 275, 10.1080/01490450152467796 Mattison, 1998, Chemoautotrophic microbial mats in submarine caves with hydrothermal sulphidic springs at Cape Palinuro, Italy, Microb. Ecol., 35, 58, 10.1007/s002489900060 Kuske, 1997, Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions, Appl. Environ. Microbiol., 63, 3614, 10.1128/AEM.63.9.3614-3621.1997 Jackson, 2000, Denaturing gradient gel electrophoresis can fail to separate 16S rDNA fragments with multiple base differences, Mol. Biol. Today, 1, 49 Ciferri, 1999, Microbial degradation of paintings, Appl. Environ. Microbiol., 65, 879, 10.1128/AEM.65.3.879-885.1999