Phylogenetic classification of Cordyceps and the clavicipitaceous fungi

Artjariyasripong, 2001, Relationships of the genus Cordyceps and related genera, based on parsimony and spectral analysis of partial 18S and 28S ribosomal gene sequences, Mycoscience, 42, 503, 10.1007/BF02460949

Barron, 1980, Fungal parasites of rotifers: a new Tolypocladium with underwater conidiation, Canadian Journal of Botany, 58, 439, 10.1139/b80-050

Barron, 1966, Verticillium chlamydosporium and its relationships to Diheterospora, Stemphyliopsis, and Paecilomyces, Canadian Journal of Botany, 44, 861, 10.1139/b66-101

Bischoff, 2005, Clarification of the host substrate of Ascopolyporus and description of Ascopolyporus philodendrus sp. nov, Mycologia, 97, 710, 10.3852/mycologia.97.3.710

Bissett, 1983, Notes on Tolypocladium and related genera, Canadian Journal of Botany, 61, 1311, 10.1139/b83-139

Blackwell, 1984, New information on Cordycepioideus bisporus and Cordycepioideus octosporus, Mycologia, 76, 763, 10.2307/3793239

Chaverri, 2006, Regiocrella, a new entomopathogenic genus with a pycnidial anamorph and its phylogenetic placement in the Clavicipitaceae, Mycologia, 97, 122

Coyle, 1990, Actinopus trapdoor spiders (Araneae, Actinopodidae) killed by the fungus, Nomuraea atypicola (Deuteromycotina), Acta Zoologica Fennica, 190, 89

Diehl, 1950

Doaudy, 2003, Comparison of the Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability, Molecular Biology and Evolution, 20, 248, 10.1093/molbev/msg042

Driver, 2000, A taxonomic revision of Metarhizium based on a phylogenetic analysis of rDNA sequence data, Mycological Research, 104, 134, 10.1017/S0953756299001756

Earle, 1901, Collections of Alabama fungi, 150

Eriksson, 1982, Cordyceps bifusispora spec. nov, Mycotaxon, 15, 185

Eriksson, 1986, Notes on ascomycete systematics, Systema Ascomycetum, 5, 113

Eriksson, 1985, Outline of the Ascomycetes–1985, Systema Ascomycetum, 4, 1

Evans, 2003, Use of clavicipitalean fungi for the biological control of arthropod pests, 517

Evans, 1982, Entomogenous fungi from the Galapagos islands, Canadian Journal of Botany, 60, 2325, 10.1139/b82-284

Evans, 1987, Fungal pathogens of spiders, Mycologist, 1, 152, 10.1016/S0269-915X(87)80107-6

Felsenstein, 1985, Confidence limits on phylogenies: An approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678

Gams, 1971

Gams, 2005, Proposal to conserve the name Isaria (anamorphic fungi) with a conserved type, Taxon, 54, 537, 10.2307/25065390

Gams, 2001, A revision of Verticillium sect. Prostrata. III. Generic classification, Nova Hedwigia, 72, 329, 10.1127/nova.hedwigia/72/2001/329

Gams, 2003, A taxonomic review of the clavicipitaceous anamorphs parasitizing nematodes and other microinvertebrates, 17

Hawksworth, 1997, Where are all the undescribed fungi?, Phytopathology, 87, 888, 10.1094/PHYTO.1997.87.9.888

Hodge, 1998

Hodge, 2003, Clavicipitaceous anamorphs, 75

Hodge, 1996, Tolypocladium inflatum is the anamorph of Cordyceps subsessilis, Mycologia, 88, 715, 10.2307/3760965

de Hoog, 1972, The genera Beauveria, Isaria, Tritirachium and Acrodontium gen. nov, Studies in Mycology, 1, 1

Huang, 2005, Molecular evidence for the taxonomic status of Metarhizium taii and its teleomorph, Cordyceps taii (Hypocreales, Clavicipitaceae), Mycotaxon, 94, 137

Huelsenbeck, 2001, MrBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754

Humber, 1987, Torrubiella ratticaudata sp. nov. (Pyrenomycetes: Clavicipitales) and other fungi from spiders on the Solomon Islands, Mycologia, 79, 375, 10.2307/3807459

Hywel-Jones, 1993, Torrubiella luteorostrata: a pathogen of scale insects and its association with Paecilomyces cinnamomeus, with a note on Torrubiella tenuis, Mycological Research, 97, 1126, 10.1016/S0953-7562(09)80514-5

Hywel-Jones, 1994, Cordyceps khaoyaiensis and C. pseudomilitaris, two new pathogens of lepidopteran larvae from Thailand, Mycological Research, 98, 939, 10.1016/S0953-7562(09)80267-0

Hywel-Jones, 1995, Hymenostilbe ventricosa sp. nov., a pathogen of cockroaches in Thailand, Mycological Research, 99, 1201, 10.1016/S0953-7562(09)80279-7

Hywel-Jones, 1996, Cordyceps myrmecophila-like fungi infecting ants in the leaf litter of tropical forest in Thailand, Mycological Research, 100, 613, 10.1016/S0953-7562(96)80017-7

Hywel-Jones, 2002, Multiples of eight in Cordyceps ascospores, Mycological Research, 106, 2, 10.1017/S0953756202235534

Hywel-Jones, 1993, Taxonomy and ecology of Hypocrella discoidea and its anamorph, Aschersonia samoeünsis, Mycological Research, 97, 871, 10.1016/S0953-7562(09)81165-9

Hywel-Jones, 1998, Three species of Hypocrella with large stromata pathogenic on scale insects, Mycologia, 90, 36, 10.2307/3761009

Hywel–Jones, 1995, Cordyceps cylindrica and its association with Nomuraea atypicola in Thailand, Mycological Research, 99, 809, 10.1016/S0953-7562(09)80731-4

Kobayasi, 1939, On the genus Cordyceps and its allies on cicadae from Japan, Bulletin of the Biogeographical Society of Japan, 9, 145

Kobayasi, 1941, The genus Cordyceps and its allies, Science Reports of the Tokyo Bunrika Daigaku, (Section B, no. 84), 5, 53

Kobayasi, 1982, Keys to the taxa of the genera Cordyceps and Torrubiella, Transactions of the Mycological Society of Japan, 23, 329

Kobayasi, 1960, Monographic studies of Cordyceps 1. Group parasitic on Elaphomyces, Bulletin of the National Science Museum Tokyo, 5, 69

Kobayasi, 1963, Monographic studies of Cordyceps 2. Group parasitic on Cicadae, Bulletin of the National Science Museum Tokyo, 6, 286

Kobayasi, 1976, The genus Cordyceps and its allies from New Guinea, Bulletin of the National Science Museum, Tokyo, Ser. B, 2, 133

Kobayasi, 1978, Cordyceps species from Japan, Bulletin of the National Science Museum, Tokyo, Ser. B, 4, 44

Kobayasi, 1982, Monograph of the genus Torrubiella, Bulletin of the National Science Museum, Tokyo, Ser. B, 8, 43

Li, 2001, Discovery and demonstration of the teleomorph of Beauveria bassiana (Bals.) Vuill., an important entomopathogenic fungus, Chinese Science Bulletin, 9, 751, 10.1007/BF03187215

Liang, 1991, Determination and identification of anamorph of Cordyceps pruinosa, Acta Mycologica Sinica, 10, 72

Liang, 1991, A new species of the genus Cordyceps and its Metarhizium anamorph, Acta Mycologica Sinica, 10, 257

Liu, 2001, Cordyceps brittlebankisoides, a new pathogen of grubs and its anamorph, Metarhizium anisopliae var. majus, Journal of Invertebrate Pathology, 78, 178, 10.1006/jipa.2001.5039

Luangsa-ard, 2005, On the relationships of Paecilomyces sect. Isarioidea species, Mycological Research, 109, 581, 10.1017/S0953756205002741

Luangsa-ard, 2004, The polyphyletic nature of Paecilomyces sensu lato based on 18S-generated rDNA phylogeny, Mycologia, 96, 773, 10.2307/3762111

Lutzoni, 2004, Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits, American Journal of Botany, 91, 1446, 10.3732/ajb.91.10.1446

MacLeod, 1954, Investigations on the genera Beauveria Vuill. and Tritirachium Limber, Canadian Journal of Botany, 32, 818, 10.1139/b54-070

2006, 146

Maddison, 2000

Mains, 1950, Entomogenous species of Akanthomyces, Hymenostilbe and Insecticola in North America, Mycologia, 42, 566, 10.2307/3755572

Mains, 1957, Species of Cordyceps parasitic on Elaphomyces, Bulletin of the Torrey Botanical Club, 84, 243, 10.2307/2482671

Mains, 1958, North American entomogenous species of Cordyceps, Mycologia, 50, 169, 10.2307/3756193

Mains, 1959, North American species of Aschersonia parasitic on Aleyrodidae, Journal of Insect Pathology, 1, 43

Mason-Gamer, 1996, Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae), Systematic Biology, 45, 524, 10.1093/sysbio/45.4.524

Massee, 1895, A revision of the genus Cordyceps, Annals of Botany, 9, 1, 10.1093/oxfordjournals.aob.a090724

Mugnai, 1989, A chemotaxonomic evaluation of the genus Beauveria, Mycological Research, 92, 199, 10.1016/S0953-7562(89)80012-7

Nannfeldt, 1932, Studien uüber die Morphologie und Systematik der nicht-lichenisierten, inoperculaten Discomyceten, Nova Acta R. Societatis Scientiarum Upsaliensis, Ser. 6, 8, 1

Nikoh, 2000, Interkingdom host jumping underground: Phylogenetic analysis of entomopathogenic fungi of the genus Cordyceps, Molecular Biology and Evolution, 17, 629, 10.1093/oxfordjournals.molbev.a026341

Oborník, 2001, Phylogeny of mitosporic entomopathogenic fungi: Is the genus Paecilomyces polyphyletic?, Canadian Journal of Microbiology, 47, 813, 10.1139/cjm-47-9-813

Ochiel, 1997, Cordycepioideus, a pathogen of termites in Kenya, Mycologist, 11, 7, 10.1016/S0269-915X(97)80059-6

Pacioni, 1978, Paecilomyces farinosus, the conidial state of Cordyceps memorabilis, Canadian Journal of Botany, 56, 391, 10.1139/b78-048

Penzig, 1904

Petch, 1921, Studies in entomogenous fungi. II. The genera of Hypocrella and Aschersonia, Annals of the Royal Botanic Garden Peradeniya, 7, 167

Petch, 1924, Studies in entomogenous fungus. IV. Some Ceylon Cordyceps, Transactions of the British Mycological Soceity, 10, 28, 10.1016/S0007-1536(24)80005-0

Petch, 1931, Notes on entomogenous fungi, Transactions of the British Mycological Society, 16, 55, 10.1016/S0007-1536(31)80006-3

Petch, 1932, Notes on entomogenous fungi, Transactions of the British Mycological Society, 16, 209, 10.1016/S0007-1536(32)80001-X

Petch, 1933, Notes on entomogenous fungi, Transactions of the British Mycological Society, 18, 48, 10.1016/S0007-1536(33)80026-X

Petch, 1936, Cordyceps militaris and Isaria farinosa, Transactions of the British Mycological Society, 20, 216, 10.1016/S0007-1536(36)80014-X

Petch, 1937, Notes on entomogenous fungi, Transactions of the British Mycological Society, 21, 34, 10.1016/S0007-1536(37)80005-4

Philippe, 2004, Phylogenomics of eukaryotes: impact of missing data on large alignments, Molecular Biology and Evolution, 21, 1740, 10.1093/molbev/msh182

Reeb, 2004, Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycota, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory, Molecular Phylogenetics and Evolution, 32, 1036, 10.1016/j.ympev.2004.04.012

Rehner, 2005, A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs, Mycologia, 97, 84, 10.3852/mycologia.97.1.84

1993

Rogerson, 1970, The hypocrealean fungi (Ascomycetes, Hypocreales), Mycologia, 62, 865, 10.2307/3757604

Rombach, 1986, Metarhizium flavoviride var. minus, var. nov., a pathogen of plant- and leafhoppers on rice in the Philippines and Solomon Islands, Mycotaxon, 27, 87

Rossman, 1999, Genera of Bionectriaceae, Nectriaceae and Hypocreaceae (Hypocreales, Ascomycetes), Studies in Mycology, 42, 1

Samson, 1974, Paecilomyces and some allied hyphomycetes, Studies in Mycology, 6, 1

Samson, 1975, Notes on entomogenous fungi from Ghana III. The genus Hymenostilbe, Proceedings, Koninklijke Nederlandse Akademie van Wetenschappen C, 78, 73

Samson, 1988

Samson, 1989, New species of Torrubiella (Ascomycotina: Clavicipitales) on insects from Ghana, Studies in Mycology, 31, 123

Shimazu, 1988, Cordyceps brongniartii sp. nov., the teleomorph of Beauveria brongniartii, Transactions of the Mycological Society of Japan, 29, 323

Spatafora, 2007, Phylogenetic evidence for an animal pathogen origin for ergot and the grass endophytes, Molecular Ecology, 16, 1701, 10.1111/j.1365-294X.2007.03225.x

Stamatakis, 2005, RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees, Bioinformatics, 21, 456, 10.1093/bioinformatics/bti191

Stensrud, 2005, Towards a phylogenetic classification of Cordyceps: ITS nrDNA sequence data confirm divergent lineages and paraphyly, Mycological Research, 109, 41, 10.1017/S095375620400139X

Suh, 1998, Molecular phylogenetic study of a termite pathogen Cordycepioideus bisporus, Mycologia, 90, 611, 10.2307/3761220

Sullivan, 2001, Neoclaviceps monostipa: features of an enigmatic clavicipitalean fungus and the phyletic status of the anamorphic genus Ephelis, Mycologia, 93, 90, 10.2307/3761608

Sullivan, 2000, Hyperdermium: a new clavicipitalean genus for some tropical epibionts of dicotyledonous plants, Mycologia, 92, 908, 10.2307/3761587

Sung, 2004, Cordyceps cardinalis sp. nov., a new species of Cordyceps with an east Asian-eastern North American distribution, Mycologia, 96, 658, 10.2307/3762183

Sung, 2001, A revision of Verticillium sect. Prostrata. II. Phylogenetic analyses of SSU and LSU nuclear rDNA sequences from anamorphs and teleomorphs of the Clavicipitaceae, Nova Hedwigia, 72, 311, 10.1127/nova.hedwigia/72/2001/311

Sung, 2007, A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach, Molecular Phylogenetics and Evolution, 10.1016/j.ympev.2007.03.011

Sung, 1996

Swofford, 2002

Tanaka, 2002, Heteroepichloeü, gen. nov. (Clavicipitaceae; Ascomycotina) on bamboo plants in East Asia, Mycoscience, 43, 87, 10.1007/S102670200014

Thompson, 1994, CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice, Nucleic Acids Research, 22, 4673, 10.1093/nar/22.22.4673

White, 1998, Examination of structure and molecular phylogenetic relationships of some graminicolous symbionts in genera Epichloeü and Parepichloeü, Mycologia, 90, 226, 10.2307/3761298

Wiens, 1998, Combining data sets with different phylogenetic histories, Systematic Biology, 47, 568, 10.1080/106351598260581

Wiens, 2003, Missing data, incomplete taxa, and phylogenetic accuracy, Systematic Biology, 52, 528, 10.1080/10635150390218330

Zang, 1982, Notes concerning the subdivisions of Cordyceps and a new species from China, Acta Botanica Yunnanica, 4, 173

Zang, 1998, Notes on the alpine Cordyceps of China and nearby nations, Mycotaxon, 66, 215

Zare, 2001, A revision of Verticillium sect. Prostrata. IV. The genera Lecanicillium and Simplicillium gen. nov, Nova Hedwigia, 73, 1, 10.1127/nova.hedwigia/73/2001/1

Zare, 2001, A revision of Verticillium sect. Prostrata. VI. The genus Haptocillium, Nova Hedwigia, 73, 271, 10.1127/nova.hedwigia/73/2001/271

Zare, 2001, A revision of Verticillium sect. Prostrata. V. The genus Pochonia, with notes on Rotiferophthora, Nova Hedwigia, 73, 51, 10.1127/nova.hedwigia/73/2001/51

Zare, 2007, Gibellulopsis, a suitable genus for Verticillium nigrescens, and Musicillium, a new genus for V. theobromae, Nova Hedwigia, 10.1127/0029-5035/2007/0085-0463

Zhang, 2004, Cordyceps campsosterna, a new pathogen of Campsosternus auratus, Fungal Diversity, 17, 239

Su, 1986, Phytocordyceps, a new genus of the Clavicipitaceae, Mycotaxon, 26, 337