Phylogenetic Diversity of Burkholderia pseudomallei isolated from veterinary cases and the environments in Peninsular Malaysia

Veterinary and Animal Science - Tập 6 - Trang 21-28 - 2018
Muhammad Abubakar Sadiq1,2, Latiffah Hassan1, Saleha Abdul Aziz1, Zunita Zakaria1, Hassan Ismail Musa1,2, Maswati Mat Amin3, Norlida Othman4
1Faculty of Veterinary Medicine, Universiti Putra Malaysia (UPM), 44300 UPM Serdang, Selangor Darul Ehsan, Malaysia
2Department of Veterinary Public Health and Preventive Medicine, Faculty of Veterinary Medicine, University of Maiduguri, P.M.B 1069, Maiduguri, Borno State, Nigeria
3Makmal Veterinar Kawasan Bukit Tengah, Peti Surat 63, 14007 Bukit Mertajam, Seberang Perai Tengah, Pulau Pinang, Malaysia
4Makmal Veterinar Kawasan Kota Bharu, Jabatan Perkhidmatan Veterinar 16150 Kubang Kerian, Kota Bharu, Kelantan, Malaysia

Tài liệu tham khảo

Baker, 2011, Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea, PloS One, 6, 1, 10.1371/journal.pone.0018343 Bower, 2003, When to use Fisher's exact test Brook, 1997, Isolation and identification of Burkholderia pseudomallei from soil using selective culture techniques and the polymerase chain reaction, Journal of Applied Microbiology, 82, 589, 10.1111/j.1365-2672.1997.tb02867.x Chantratita, 2007, Biological relevance of colony morphology and phenotypic switching by Burkholderia pseudomallei, Journal of Bacteriology, 189, 807, 10.1128/JB.01258-06 Chapple, 2016, Burkholderia pseudomallei genotype distribution in the Northern Territory, Australia, The American Journal of Tropical Medicine and Hygiene, 94, 15, 10.4269/ajtmh.15-0627 Cheng, 2005, Melioidosis: Epidemiology, pathophysiology, and management, Clinical Microbiology Reviews, 18, 383, 10.1128/CMR.18.2.383-416.2005 Choy, 2000, Animal melioidosis in Australia, Acta Tropica, 74, 153, 10.1016/S0001-706X(99)00065-0 Clark, 2008 Currie, 2007, Australian and Thai isolates of Burkholderia pseudomallei are distinct by multilocus sequence typing: Revision of a case of mistaken identity, Journal of Clinical Microbiology, 45, 3828, 10.1128/JCM.01590-07 Dale, 2011, Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. PLoS Neglected Tropical Diseases, 5, 1 Dance, 2000, Ecology of Burkholderia pseudomallei and the interactions between environmental Burkholderia spp. and human–animal hosts, Acta Tropica, 74, 159, 10.1016/S0001-706X(99)00066-2 Dance, 2009, Melioidosis De Smet, 2015, Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy, Journal of Clinical Microbiology, 53, 323, 10.1128/JCM.02574-14 Feil, 2004, eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data, Journal of Bacteriology, 186, 1518, 10.1128/JB.186.5.1518-1530.2004 Finkelstein, 2000, Pseudomonas (Burkholderia) pseudomallei in Thailand, 1964-1967: Geographic distribution of the organism, attempts to identify cases of active infection, and presence of antibody in representative sera, The American Journal of Tropical Medicine and Hygiene, 62, 232, 10.4269/ajtmh.2000.62.232 Galimand, 1982, Répartition de Pseudomonas pseudomallei en France et dans le monde, Bull. Soc. Vét. Prat. France, 66, 651 Getachew, 2013, Genetic variability of vancomycin-resistant Enterococcus faecium and Enterococcus faecalis isolates from humans, chickens, and pigs in Malaysia, Applied and Environmental Microbiology, 79, 4528, 10.1128/AEM.00650-13 Godoy, 2003, Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei, Journal of Clinical Microbiology, 41, 2068, 10.1128/JCM.41.5.2068-2079.2003 How, 2005, Melioidosis in Pahang, Malaysian Medical Journal, 60, 606 http://bpseudomallei.mlst.net. Multilocus Sequence Typing (MLST) Database. Multilocus Sequence Typing (MLST) Home. 2018. Idris, 1998, Melioidosis: A case of sheep to human transmission, Journal Veterinar Malaysia, 10, 77 Jolley, 2001, Sequence type analysis and recombinational tests (START), Bioinformatics, 17, 1230, 10.1093/bioinformatics/17.12.1230 Lewis, 2008, Pigs as source of methicillin-resistant Staphylococcus aureus CC398 infections in humans, Denmark, Emerging Infectious Diseases, 14, 1383, 10.3201/eid1409.071576 Limmathurotsakul, 2012, Effectiveness of a simplified method for isolation of Burkholderia pseudomallei from soil, Applied and Environmental Microbiology, 78, 876, 10.1128/AEM.07039-11 Mayo, 2011, Burkholderia pseudomallei in unchlorinated domestic bore water, tropical northern Australia, Emerging Infectious Diseases, 17, 1283, 10.3201/eid1707.100614 McCombie, 2006, Multilocus sequence typing of historical Burkholderia pseudomallei isolates collected in Southeast Asia from 1964 to 1967 provides insight into the epidemiology of melioidosis, Journal of Clinical Microbiology, 44, 2951, 10.1128/JCM.00725-06 McRobb, 2014, Distribution of Burkholderia pseudomallei in Northern Australia, a land of diversity, Applied and Environmental Microbiology, 80, 3463, 10.1128/AEM.00128-14 Musa, 2015, Case‐control investigation on the risk factors of melioidosis in small ruminant farms in Peninsular Malaysia, Journal of Applied Microbiology, 1 Musa, 2012, Seroprevalence of Melioidosis among livestock in Malaysia from 2000–2009, Malaysian Journal of Veterinary Research, 3, 41 Neliyathodi, 2015, Pleuropulmonary melioidosis with osteomyelitis rib, Lung India: Official organ of Indian Chest Society, 32, 67, 10.4103/0970-2113.148456 Nierman, 2004, Structural flexibility in the Burkholderia mallei genome, Proceedings of the National Academy of Sciences of the United States of America, 101, 14246, 10.1073/pnas.0403306101 Pagalavan, 2005, Melioidosis: The Johor Bahru experience, Medical Journal of Malaysia, 60, 599 Pearson, 2009, Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer, BMC Biology, 7, 1, 10.1186/1741-7007-7-78 Podin, 2014, Burkholderia pseudomallei Isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides, Antimicrobial Agents and Chemotherapy, 58, 162, 10.1128/AAC.01842-13 Puthucheary, 2002 Sawyer, 1989, Statistical tests for detecting gene conversion, Molecular Biology and Evolution, 6, 526 Smith, 1993, How clonal are bacteria, Proceedings of the National Academy of Sciences, 90, 4384, 10.1073/pnas.90.10.4384 Sprague, 2004, Melioidosis in animals: A review on epizootiology, diagnosis and clinical presentation, Journal of Veterinary Medicine, 51, 305, 10.1111/j.1439-0450.2004.00797.x Sprent, 2011, 524 Tamura, 2013, MEGA6: Molecular evolutionary genetics analysis version 6.0, Molecular Biology and Evolution, 30, 2725, 10.1093/molbev/mst197 Vesaratchavest, 2006, Nonrandom distribution of Burkholderia pseudomallei clones in relation to geographical location and virulence, Journal of Clinical Microbiology, 44, 2553, 10.1128/JCM.00629-06 Vongphayloth, 2012, Burkholderia pseudomallei detection in surface water in Southern Laos using Moore's Swabs, The American Journal of Tropical Medicine and Hygiene, 86, 872, 10.4269/ajtmh.2012.11-0739 White, 2003, Melioidosis, The Lancet, 361, 1715, 10.1016/S0140-6736(03)13374-0 Zehnder, 2014, Burkholderia pseudomallei isolates in 2 Pet Iguanas, California, USA, Emerging Infectious Diseases, 20, 304, 10.3201/eid2002.131314 Zulkefli, 2016, Molecular evidence of Burkholderia pseudomallei genotypes based on geographical distribution, PeerJ, 4, 1, 10.7717/peerj.1802