Phosphorylation of Leghemoglobin at S45 is Most Effective to Disrupt the Molecular Environment of Its Oxygen Binding Pocket

The Protein Journal - Tập 34 - Trang 158-167 - 2015
Kaushik Bhar1, Atanu Maity2, Amit Ghosh1, Tanusree Das3, Shubhra Ghosh Dastidar2, Anirban Siddhanta1
1Department of Biochemistry, University of Calcutta, Kolkata, India
2BioinformaticsCenter, Bose Institute, Kolkata, India
3Infectious Diseases and Immunology Division, Indian Institute of Chemical Biology (CSIR), Kolkata, India

Tóm tắt

In leguminous plants, nitrogenase that catalyzes anaerobic symbiotic nitrogen fixation is protected by the sequestration of O2 by Leghemoglobin (LegH). The modulation of the oxygen binding capacity of Hemoglobin (Hb) by different post-translational modifications is well studied; whereas similar studies on LegH’s O2 binding are not yet benchmarked. Our results show that in vitro serine phosphorylation of recombinant LegH from Lotus japonicus, a model legume, by a homologous kinase caused a reduction in its oxygen consumption as determined by Clark type electrode. Although mass spectrometry revealed a few phosphorylated serine residues in the LegH, molecular modeling study showed that particularly S45 is the most critical one, along with S55, however the latter with lesser impact on its molecular environment responsible for oxygen consumption. Separate S45D and S55D mutants of recombinant LegH also corroborated the results obtained from molecular modeling study. Thus, this work lays groundwork for further investigation of structural and functional role of serine phosphorylation as one of the mechanisms by which oxygen consumption by LegH may possibly be regulated during nodulation.

Tài liệu tham khảo

Kubo H (1939) Überhämoproteinaus den wurzelknöllchen von leguminosen. Acta Phytochim (Tokyo) 11:195–200 Ross EJH, Lira-Ruan V, Arredondo-Peter R, Klucas RV, Sarath G (2002) Recent insights into plant hemoglobins. Rev Plant Biochem Biotechnol 1:173–189 Oldroyd GED (2001) Dissecting symbiosis: developments in nod factor signal transduction. Annals Bot 87:709–718 LimpensE BisselingT (2003) Signaling in symbiosis. Curr Opn Plant Biol 6:343–350 Hargrove MS (2003) Plants, humans and hemoglobins. Trends Plant Sci 8(8):387–393 Marroquí S, Zorreguieta A, Santamaría C, Temprano F, Soberón M, Megías M, Downie JA (2001) Enhanced symbiotic performance by Rhizobium tropici glycogen synthase mutants. J Bacteriol 183(3):854–864 Cheng Q (2008) Perspectives in biological nitrogen fixation research. J Int Plant Biol 50(7):786–798 Wittenberg JB (1973) Nicotinic acid as a ligand affecting leghemoglobin structure and oxygen reactivity. Proc Nat Acad Sci USA 70(2):564–568 Harutyunyan EH, Safonova TN, Kuranova IP, Popov AN, Teplyakov AV, Obmolova GV, Rusakov AA, Vainshtein BK, Dodson GG, Wilson JC, Perutz MF (1995) The structure of deoxy- and oxy-Leghaemoglobin from Lupin. J Mol Biol 251:104–115 Martí MA, Capece L, Bikiel DE, Falcone B, Estrin DA (2007) Oxygen affinity controlled by dynamical distal conformations: the soybean Leghemoglobin and the Paramecium caudatum hemoglobin cases. Proteins 68(2):480–487 Kawashima K, Suganuma N, Tamaoki M, Kouchi H (2001) Two types of pea leghemoglobin genes showing different O2-binding affinities and distinct patterns of spatial expression in nodules. Plant Physiol 125:641–651 Coates ML (1975) Hemoglobin function in the vertebrates: an evolutionary model. J Mol Evol 6:285–307 ArnoneA Perutz MF (1974) Structure of inositol hexaphosphate–human deoxyhaemoglob in complex. Nature 249:34–36 Benesch R, Benesch RE (1967) The effect of organic phosphates from the human erythrocyte on the allosteric properties of haemoglobin. Biochem Biophys Res Commun 26(2):162–167 Zinchuk VV (2006) Nitric oxide effect on the hemoglobin-oxygen affinity. J Physiol Pharma 57(1):29–38 Hess DT, Stamler JS (2012) Regulation by S-nitrosylation of protein post-translational modification. J Biol Chem 287(7):4411–4418 Jones RL, Peterson CM (1981) Hematologic alterations in diabetes mellitus. Am J Med 70(2):339–352 Giardina B, Ascenzi P, Clementi ME, Sanctis GD, Rizzi M, Coletta M (1996) Functional modulation by lactate of myoglobin: a monomeric allosteric hemoprotein. J Biol Chem 271:16999–17001 Traylo TG, Deardurff LA, Coletta M, Ascenzi P, Antonini E, Brunori M (1983) Reactivity of ferrous heme proteins at low pH. J Biol Chem 258:12147–12148 Jayaraman T, Tejero J, Chen BB, Blood AB, Frizzell S, Shapiro C, Tiso M, Hood BL, Wang X, Zhao X, Conrads TP, Mallampalli RK, Gladwin MT (2011) 14-3-3 binding and phosphorylation of neuroglobin during hypoxia modulate six-to-five heme pocket coordination and rate of nitrite reduction to nitric oxide. J Biol Chem 286(49):42679–42689 Handberg K, Stougaard J (1992) Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics. Plant J 2:487–496 Becana M, Salin ML, Ji L, Klucas RV (1991) Flavin-mediated reduction of ferric leghemoglobin from soybean nodules. Planta 183(4):575–583 Tirichine L, Imaizumi-Anraku H, Yoshida S, Murakami Y, Madsen LH, Miwa H, Nakagawa T, Sandal N, Albrektsen AS, Kawaguchi M, Downie A, Sato S, Tabata S, Kouchi H, Parniske M, Kawasaki S, Stougaard J (2006) Deregulation of a Ca2+/calmodulin dependent kinase leads to spontaneous nodule development. Nature 441(7097):1153–1156 Hargrove MS, Barry JK, Brucker EA, Berry MB, Phillips GN Jr (1997) Characterization of recombinant soybean leghemoglobin a and apolar distal histidine mutants. J Mol Biol 266:1032–1042 Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, Shen MY, Pieper U, Sali A (2006) Comparative protein structure modeling with modeller. Curr Protoc Bioinformatics, Wiley Supplement 15 5.6.1–5.6.30 Blom N, Gammeltoft S, Brunak S (1999) Sequence- and structure-based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 294(5):1351–1362 Swainsbury DJ, Zhou L, Oldroyd GE, Bornemann S (2012) Calcium ion binding properties of Medicago truncatula calcium/calmodulin dependent protein kinase. Biochemistry 51(35):6895–6907 Singh S, Parniske M (2012) Activation of calcium- and calmodulin-dependent protein kinase (CCaMK), the central regulator of plant root endosymbiosis. Curr Opn Plant Biol 15:444–453 White RR, Kwon YG, Taing M, Lawrence DS, Edelman AM (1998) Definition of optimal substrate recognition motifs of Ca2+-calmodulin-dependent protein kinases IV and II reveals shared and distinctive features. J Biol Chem 273(6):3166–3172 Yan DJ, Li W, Xiang Y, Wen GB, Lin YW, Tan X (2015) A novel tyrosine-heme C–O covalent linkage in F43Y myoglobin: a new post-translational modification of heme proteins. ChemBioChem 16(1):47–50 Lin YW, Shu XG, Du KJ, Nie CM, Wen GB (2014) Computational insight into nitration of human myoglobin. Comput Biol Chem 52:60–65 Dastidar SG, Raghunathan D, Nicholson J, Hupp TR, Lane DP, Verma CS (2011) Chemical states of the N-terminal “lid” of MDM2 regulate p53 binding: simulations reveal complexities of modulation. Cell Cycle 10(1):82–89