Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis?

Current Opinion in Plant Biology - Tập 14 - Trang 392-399 - 2011
Sarah Maria Schmidt1, Ralph Panstruga2
1University of Amsterdam, Swammerdam Institute for Life Science, Postbus 94215, 1090 GE Amsterdam, The Netherlands
2Max-Planck Institute for Plant Breeding Research, Department of Plant-Microbe Interactions, Carl-von-Linné-Weg 10, 50829 Köln, Germany

Tài liệu tham khảo

Lévesque, 2010, Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire, Genome Biol, 11, R73, 10.1186/gb-2010-11-7-r73 Hane, 2007, Dothideomycete-plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum, Plant Cell, 19, 3347, 10.1105/tpc.107.052829 Ellwood, 2010, A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres, Genome Biol, 11, R109, 10.1186/gb-2010-11-11-r109 Han, 2001, Genes determining pathogenicity to pea are clustered on a supernumerary chromosome in the fungal plant pathogen Nectria haematococca, Plant J, 25, 305, 10.1046/j.1365-313x.2001.00969.x Kämper, 2006, Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis, Nature, 444, 97, 10.1038/nature05248 Spanu, 2010, Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism, Science, 330, 1543, 10.1126/science.1194573 Martin, 2010, Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis, Nature, 464, 1033, 10.1038/nature08867 Martin, 2008, The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis, Nature, 452, 88, 10.1038/nature06556 Dean, 2005, The genome sequence of the rice blast fungus Magnaporthe grisea, Nature, 434, 980, 10.1038/nature03449 Ma, 2010, Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium, Nature, 464, 367, 10.1038/nature08850 Cuomo, 2007, The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization, Science, 317, 1400, 10.1126/science.1143708 Coleman, 2009, The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion, PLoS Genet, 5, e1000618, 10.1371/journal.pgen.1000618 Baxter, 2010, Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome, Science, 330, 1549, 10.1126/science.1195203 Yoshida, 2009, Association genetics reveals three novel avirulence genes from the rice blast fungal pathogen Magnaporthe oryzae, Plant Cell, 21, 1573, 10.1105/tpc.109.066324 Hatta, 2002, A conditionally dispensable chromosome controls host-specific pathogenicity in the fungal plant pathogen Alternaria alternata, Genetics, 161, 59, 10.1093/genetics/161.1.59 Tzeng, 1992, A restriction-fragment-length-polymorphism map and electrophoretic karyotype of the fungal maize pathogen Cochliobolus heterostrophus, Genetics, 130, 81, 10.1093/genetics/130.1.81 Leclair, 1996, Meiotic behaviour of the minichromosome in the phytopathogenic ascomycete Leptosphaeria maculans, Curr Genet, 30, 541, 10.1007/s002940050167 Chuma, 2003, Meiotic behavior of a supernumerary chromosome in Magnaporthe oryzae, Curr Genet, 43, 191, 10.1007/s00294-003-0390-7 Covert, 1998, Supernumerary chromosomes in filamentous fungi, Curr Genet, 33, 311, 10.1007/s002940050342 Wittenberg, 2009, Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola, PLoS One, 4, e5863, 10.1371/journal.pone.0005863 de Wit, 2009, Fungal effector proteins: past, present and future, Mol Plant Pathol, 10, 735, 10.1111/j.1364-3703.2009.00591.x Stukenbrock, 2010, Whole genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola, PLoS Genet, 6, e1001189, 10.1371/journal.pgen.1001189 Temporini, 2004, An analysis of the phylogenetic distribution of the pea pathogenicity genes of Nectria haematococca MPVI supports the hypothesis of their origin by horizontal transfer and uncovers a potentially new pathogen of garden pea: Neocosmospora boniensis, Curr Genet, 46, 29, 10.1007/s00294-004-0506-8 Rodriguez-Carres, 2008, The supernumerary chromosome of Nectria haematococca that carries pea-pathogenicity-related genes also carries a trait for pea rhizosphere competitiveness, Appl Environ Microbiol, 74, 3849, 10.1128/AEM.00351-08 Proctor, 2009, Evidence that a secondary metabolic biosynthetic gene cluster has grown by gene relocation during evolution of the filamentous fungus Fusarium, Mol Microbiol, 74, 1128, 10.1111/j.1365-2958.2009.06927.x Yu, 2005, Regulation of secondary metabolism in filamentous fungi, Annu Rev Phytopathol, 43, 437, 10.1146/annurev.phyto.43.040204.140214 Akagi, 2009, Horizontal chromosome transfer, a mechanism for the evolution and differentiation of a plant-pathogenic fungus, Eukaryot Cell, 8, 1732, 10.1128/EC.00135-09 Walton, 2000, Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis, Fungal Genet Biol, 30, 167, 10.1006/fgbi.2000.1224 Haas, 2009, Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans, Nature, 461, 393, 10.1038/nature08358 Win, 2007, Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes, Plant Cell, 19, 2349, 10.1105/tpc.107.051037 Schirawski, 2010, Pathogenicity determinants in smut fungi revealed by genome comparison, Science, 330, 1546, 10.1126/science.1195330 Chen, 2007, Molecular mapping of two cultivar-specific avirulence genes in the rice blast fungus Magnaporthe grisea, Mol Genet Genomics, 277, 139, 10.1007/s00438-006-0179-8 Gout, 2006, Lost in the middle of nowhere: the AvrLm1 avirulence gene of the Dothideomycete Leptosphaeria maculans, Mol Microbiol, 60, 67, 10.1111/j.1365-2958.2006.05076.x Fudal, 2007, Heterochromatin-like regions as ecological niches for avirulence genes in the Leptosphaeria maculans genome: map-based cloning of AvrLm6, Mol Plant Microbe Interact, 20, 459, 10.1094/MPMI-20-4-0459 Parlange, 2009, Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by the Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change, Mol Microbiol, 71, 851, 10.1111/j.1365-2958.2008.06547.x Fedorova, 2008, Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus, PLoS Genet, 4, e1000046, 10.1371/journal.pgen.1000046 Gardner, 2002, Genome sequence of the human malaria parasite Plasmodium falciparum, Nature, 419, 498, 10.1038/nature01097 Barry, 2003, Why are parasite contingency genes often associated with telomeres?, Int J Parasitol, 33, 29, 10.1016/S0020-7519(02)00247-3 Thon, 2006, The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae, Genome Biol, 7, R16, 10.1186/gb-2006-7-2-r16 Daboussi, 2003, Transposable elements in filamentous fungi, Annu Rev Microbiol, 57, 275, 10.1146/annurev.micro.57.030502.091029 Friesen, 2006, Emergence of a new disease as a result of interspecific virulence gene transfer, Nat Genet, 38, 953, 10.1038/ng1839 Novo, 2009, Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118, Proc Natl Acad Sci USA, 106, 16333, 10.1073/pnas.0904673106 Schmitt, 2009, Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi, PLoS One, 4, e4437, 10.1371/journal.pone.0004437 Richards, 2006, Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms, Curr Biol, 16, 1857, 10.1016/j.cub.2006.07.052 Boto, 2010, Horizontal gene transfer in evolution: facts and challenges, Proc R Soc B Biol Sci, 277, 819, 10.1098/rspb.2009.1679 Rep, 2005, Small proteins of plant-pathogenic fungi secreted during host colonization, FEMS Microbiol Lett, 253, 19, 10.1016/j.femsle.2005.09.014 Choi, 2010, Fungal secretome database: integrated platform for annotation of fungal secretomes, BMC Genomics, 11, 105, 10.1186/1471-2164-11-105 Skibbe, 2010, Maize tumors caused by Ustilago maydis require organ-specific genes in host and pathogen, Science, 328, 89, 10.1126/science.1185775 Marcel, 2010, Tissue-adapted invasion strategies of the rice blast fungus Magnaporthe oryzae, Plant Cell, 22, 3177, 10.1105/tpc.110.078048 Panstruga, 2009, Terrific protein traffic: the mystery of effector protein delivery by filamentous plant pathogens, Science, 324, 748, 10.1126/science.1171652 Birch, 2008, Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance, Curr Opin Plant Biol, 11, 373, 10.1016/j.pbi.2008.04.005 Schornack, 2010, Ancient class of translocated oomycete effectors targets the host nucleus, Proc Natl Acad Sci USA, 107, 17421, 10.1073/pnas.1008491107 Godfrey, 2010, Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif, BMC Genomics, 11, 317, 10.1186/1471-2164-11-317 Soanes, 2008, Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis, PLoS One, 3, e2300, 10.1371/journal.pone.0002300 Mueller, 2008, The secretome of the maize pathogen Ustilago maydis, Fungal Genet Biol, 45, S63, 10.1016/j.fgb.2008.03.012 Hahn, 1997, Characterization of in planta induced rust genes isolated from a haustorium-specific cDNA library, Mol Plant Microbe Interact, 10, 427, 10.1094/MPMI.1997.10.4.427 Struck, 2002, Characterization of a developmentally regulated amino acid transporter (AAT1p) of the rust fungus Uromyces fabae, Mol Plant Pathol, 3, 23, 10.1046/j.1464-6722.2001.00091.x Voegele, 2001, The role of haustoria in sugar supply during infection of broad bean by the rust fungus Uromyces fabae, Proc Natl Acad Sci USA, 98, 8133, 10.1073/pnas.131186798 Wahl, 2010, A novel high-affinity sucrose transporter is required for virulence of the plant pathogen Ustilago maydis, PLoS Biol, 8, 1000303, 10.1371/journal.pbio.1000303 Chen, 2010, Sugar transporters for intercellular exchange and nutrition of pathogens, Nature, 468, 10.1038/nature09606 Bhadauria, 2009, Reverse genetics for functional genomics of phytopathogenic fungi and oomycetes, Comp Funct Genom, 2009, 380719, 10.1155/2009/380719 Bignell, 2010, What does it take to be a plant pathogen: genomic insights from Streptomyces species, Ant Leeuw Int J Gen Mol Microbiol, 98, 179, 10.1007/s10482-010-9429-1 Butler, 2009, Evolution of pathogenicity and sexual reproduction in eight Candida genomes, Nature, 459, 657, 10.1038/nature08064 Van De Wouw AP, Howlett HP: Fungal pathogenicity genes in the age of ‘omics’. Mol Plant Pathol (in press). doi:10.1111/j.1364-3703.2010.00680.x.