PICRUSt2 for prediction of metagenome functions

Nature Biotechnology - Tập 38 Số 6 - Trang 685-688 - 2020
Gavin Douglas1, Vincent J. Maffei2, Jesse Zaneveld3, Svetlana N. Yurgel4, James R. Brown5, Christopher M. Taylor2, Curtis Huttenhower6, Morgan G. I. Langille7
1Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada.
2Department of Microbiology, Immunology and Parasitology, Louisiana State University Health Sciences Center, New Orleans, LA, USA
3Division of Biological Sciences, School of STEM, University of Washington Bothell, Bothell, WA, USA
4Department of Plant, Food, and Environmental Sciences, Dalhousie University, Truro, Nova Scotia, Canada
5Computational Biology, GlaxoSmithKline R&D, Collegeville, PA, USA
6Biostatistics Department, Harvard T. H. Chan School of Public Health, Boston, MA, USA
7Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada

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Tài liệu tham khảo

Langille, M. G. I. et al. Nat. Biotechnol. 31, 814–821 (2013).

Iwai, S. et al. PLoS One 11, e0166104 (2016).

Jun, S. R. et al. BMC Res. Notes 8, 479 (2015).

Aßhauer, K. P., Wemheuer, B., Daniel, R. & Meinicke, P. Bioinformatics 31, 2882–2884 (2015).

Wemheuer, F. et al. Preprint at bioRxiv https://doi.org/10.1101/490037 (2018).

DeSantis, T. Z. et al. Appl. Environ. Microbiol. 72, 5069–5072 (2006).

Markowitz, V. M. et al. Nucleic Acids Res. 40 (D1), D115–D122 (2012).

Barbera, P. et al. Syst. Biol. 68, 365–369 (2019).

Czech, L. & Stamatakis, A. PLoS One 14, e0217050 (2019).

Louca, S. & Doebeli, M. Bioinformatics 34, 1053–1055 (2018).

Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. & Tanabe, M. Nucleic Acids Res. 40 (D1), D109–D114 (2012).

Narayan, N. R. et al. BMC Genomics 21, 56 (2020).

Caspi, R. et al. Nucleic Acids Res. 44 (D1), D471–D480 (2016).

Franzosa, E. A. et al. Nat. Methods 15, 962–968 (2018).

Chen, I.-M. A. et al. PLoS One 8, e54859 (2013).

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Nature Biotechnology

Tập 38 Số 6

685-688

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