P-type ATPases use a domain-association mechanism to couple ATP hydrolysis to conformational change

Albers RW (1967) Biochemical aspects of active transport. Annu Rev Biochem 36:727–756 Apell HJ, Benz G, Sauerbrunn D (2011) Proton diet for the sodium pump. Biochemistry 50:409–418 Bal NC, Maurya SK, Sopariwala DH, Sahoo SK, Gupta SC, Shaikh SA, Pant M, Rowland LA, Bombardier E, Goonasekera SA, Tupling AR, Molkentin JD, Periasamy M (2012) Sarcolipin is a newly identified regulator of muscle-based thermogenesis in mammals. Nat Med 18:1575–1579 Boyer PD (1998) Energy, Life, and ATP (Nobel Lecture). Angew Chem Int Ed Engl 37:2296–2307 Bublitz M, Morth JP, Nissen P (2011) P-type ATPases at a glance. J Cell Sci 124:2515–2519 Daiho T, Yamasaki K, Wang G, Danko S, Iizuka H, Suzuki H (2003) Deletions of any single residues in Glu40-Ser48 loop connecting a domain and the first transmembrane helix of sarcoplasmic reticulum Ca(2+)-ATPase result in almost complete inhibition of conformational transition and hydrolysis of phosphoenzyme intermediate. J Biol Chem 278:39197–39204 Daiho T, Yamasaki K, Danko S, Suzuki H (2007) Critical role of Glu40-Ser48 loop linking actuator domain and first transmembrane helix of Ca2+-ATPase in Ca2+ deocclusion and release from ADP-insensitive phosphoenzyme. J Biol Chem 282:34429–34447 Das A, Rui H, Nakamoto R, Roux B (2017) Conformational transitions and alternating-access mechanism in the sarcoplasmic reticulum calcium pump. J Mol Biol 429:647–666 Dyla M, Terry DS, Kjaergaard M, Sorensen TL, Lauwring Andersen J, Andersen JP, Rohde Knudsen C, Altman RB, Nissen P, Blanchard SC (2017) Dynamics of P-type ATPase transport revealed by single-molecule FRET. Nature 551:346–351 Gourdon P, Liu XY, Skjorringe T, Morth JP, Moller LB, Pedersen BP, Nissen P (2011) Crystal structure of a copper-transporting PIB-type ATPase. Nature 475:59–64 Hill TL (1989) Free energy transduction and biochemical cycle kinetics. Springer, New York Jardetzky O (1966) Simple allosteric model for membrane pumps. Nature 211:969–970 Jensen AM, Sorensen TL, Olesen C, Moller JV, Nissen P (2006) Modulatory and catalytic modes of ATP binding by the calcium pump. EMBO J 25:2305–2314 Kuhlbrandt W (2004) Biology, structure and mechanism of P-type ATPases. Nat Rev Mol Cell Biol 5:282–295 Laursen M, Yatime L, Nissen P, Fedosova NU (2013) Crystal structure of the high-affinity Na+K+-ATPase-ouabain complex with Mg2+ bound in the cation binding site. Proc Natl Acad Sci USA 110:10958–10963 Liu Y, Liu Y, He L, Zhao Y, Zhang X (2018) Single-molecule fluorescence studies on the conformational change of the ABC transporter MsbA. Biophys Rep 4:153–165 Meissner G, Young RC (1980) Proton permeability of sarcoplasmic reticulum vesicles. J Biol Chem 255:6814–6819 Norimatsu Y, Hasegawa K, Shimizu N, Toyoshima C (2017) Protein-phospholipid interplay revealed with crystals of a calcium pump. Nature 545:193–198 Obara K, Miyashita N, Xu C, Toyoshima I, Sugita Y, Inesi G, Toyoshima C (2005) Structural role of countertransport revealed in Ca(2+) pump crystal structure in the absence of Ca(2+). Proc Natl Acad Sci USA 102:14489–14496 Palmgren MG, Nissen P (2011) P-type ATPases. Annu Rev Biophys 40:243–266 Post RL, Hegyvary C, Kume S (1972) Activation by adenosine triphosphate in the phosphorylation kinetics of sodium and potassium ion transport adenosine triphosphatase. J Biol Chem 247:6530–6540 Ratheal IM, Virgin GK, Yu H, Roux B, Gatto C, Artigas P (2010) Selectivity of externally facing ion-binding sites in the Na/K pump to alkali metals and organic cations. Proc Natl Acad Sci USA 107:18718–18723 Skou JC (1957) The influence of some cations on an adenosine triphosphatase from peripheral nerves. Biochim Biophys Acta 23:394–401 Sorensen TL, Moller JV, Nissen P (2004) Phosphoryl transfer and calcium ion occlusion in the calcium pump. Science 304:1672–1675 Toyoshima C (2008) Structural aspects of ion pumping by Ca2+-ATPase of sarcoplasmic reticulum. Arch Biochem Biophys 476:3–11 Toyoshima C, Cornelius F (2013) New crystal structures of PII-type ATPases: excitement continues. Curr Opin Struct Biol 23:507–514 Toyoshima C, Nakasako M, Nomura H, Ogawa H (2000) Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 Å resolution. Nature 405:647–655 Toyoshima C, Nomura H, Tsuda T (2004) Lumenal gating mechanism revealed in calcium pump crystal structures with phosphate analogues. Nature 432:361–368 Toyoshima C, Norimatsu Y, Iwasawa S, Tsuda T, Ogawa H (2007) How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump. Proc Natl Acad Sci USA 104:19831–19836 Wang FY, Xi QY, Huang KB, Tang XM, Chen ZF, Liu YC, Liang H (2017) Crystal structure, cytotoxicity and action mechanism of Zn(II)/Mn(II) complexes with isoquinoline ligands. J Inorg Biochem 169:23–31 Winther AM, Bublitz M, Karlsen JL, Moller JV, Hansen JB, Nissen P, Buch-Pedersen MJ (2013) The sarcolipin-bound calcium pump stabilizes calcium sites exposed to the cytoplasm. Nature 495:265–269 Zhang XC, Feng W (2016) Thermodynamic aspects of ATP hydrolysis of actomyosin complex. Biophys Rep 2:87–94 Zhang XC, Li H (2019) Interplay between the electrostatic membrane potential and conformational changes in membrane proteins. Protein Sci 28:502–512 Zhang XC, Cao C, Zhou Y, Zhao Y (2014) Proton transfer-mediated GPCR activation. Protein Cell 6:12–17 Zhang XC, Zhao Y, Heng J, Jiang D (2015) Energy coupling mechanisms of MFS transporters. Protein Sci 24:1560–1579 Zhang XC, Han L, Zhao Y (2016) Thermodynamics of ABC transporters. Protein Cell 7:17–27 Zhang XC, Liu M, Lu G, Heng J (2018a) Thermodynamic secrets of multidrug resistance: a new take on transport mechanisms of secondary active antiporters. Protein Sci 27:595–613 Zhang XC, Yang H, Liu Z, Sun F (2018b) Thermodynamics of voltage-gated ion channels. Biophys Rep 4:300–319