Organization and structure of NADH-dependent glutamate synthase gene from rice plants

Satoshi Goto1, Takumi Akagawa1, Soichi Kojima1, Toshihiko Hayakawa1, Tomoyuki Yamaya1
1Department of Life Science, Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan

Tài liệu tham khảo

Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2 Avila, 1993, Cloning and sequence analysis of a cDNA for barley ferredoxin-dependent glutamate synthase and molecular analysis of photorespiratory mutants deficient in the enzyme, Planta, 189, 475, 10.1007/BF00198209 Ballas, 1993, Identification of the auxin-responsive element, AuxRE, in the primary indoleacetic acid-inducible gene, PS-IAA4/5, of pea (Pisum sativum), J. Mol. Biol., 233, 580, 10.1006/jmbi.1993.1537 Ellerstrom, 1996, Functional dissection of a napin gene promoter: identification of promoter elements required for embryo and endosperm-specific transcription, Plant Mol. Biol., 32, 1019, 10.1007/BF00041385 Filetici, 1996, Sequence of the GLT1 gene from Saccharomyces cerevisiae reveals the domain structure of yeast glutamate synthase, Yeast, 12, 1359, 10.1002/(SICI)1097-0061(199610)12:13<1359::AID-YEA3>3.0.CO;2-5 Fujiwara, 1994, Tissue-specific and temporal regulation of a beta-conglycinin gene: roles of the RY repeat and other cis-acting elements, Plant Mol. Biol., 24, 261, 10.1007/BF00020166 Gilmartin, 1990, Molecular light switches for plant genes, Plant Cell, 2, 369 Gregerson, 1993, Molecular characterization of NADH-dependent glutamate synthase from alfalfa nodules, Plant Cell, 5, 215 Hayakawa, 1994, Cellular localization of NADH-dependent glutamate-synthase protein in vascular bundles of unexpanded leaf blades and young grains of rice plants, Planta, 193, 455, 10.1007/BF00201826 Hayakawa, 1992, Purification, characterization, and immunological properties of NADH-dependent glutamate synthase from rice cell cultures, Plant Physiol., 98, 1317, 10.1104/pp.98.4.1317 Hayakawa, 1993, Changes in the content of two glutamate synthase proteins in spikelets of rice (Oryza sativa) plants during ripening, Plant Physiol., 101, 1257, 10.1104/pp.101.4.1257 Higo, 1998, PLACE: a database of plant cis-acting regulatory DNA elements, Nucleic Acids Res., 26, 358, 10.1093/nar/26.1.358 Hirose, 1997, Inducible accumulation of mRNA for NADH-dependent glutamate synthase in rice roots in response to ammonium ions, Plant Cell Physiol., 38, 1295, 10.1093/oxfordjournals.pcp.a029120 Ishiyama, 1998, Expression of NADH-dependent glutamate synthase protein in epidermis and exodermis of rice roots in response to the supply of nitrogen, Planta, 204, 288, 10.1007/s004250050258 Johnson, 1988, Subunit location of the iron-sulfur clusters in fumarate reductase from Escherichia coli, J. Biol. Chem., 263, 14732, 10.1016/S0021-9258(18)68098-6 Lea, 1974, Alternative route for nitrogen assimilation in higher plants, Nature, 251, 614, 10.1038/251614a0 P.J. Lea, S.A. Robinson, G.R. Stewart, The enzymology and metabolism of glutamine, glutamate and asparagine, in: B.J. Miflin, P.J. Lea (Eds.), The Biochemistry of Plants. Vol. 16. Intermediary Nitrogen Metabolism, Academic Press, San Diego, CA, 1990, pp. 121–157. Lederer, 1985, Complete amino acid sequence of flavocytochrome b2 from baker’s yeast, Eur. J. Biochem., 152, 419, 10.1111/j.1432-1033.1985.tb09213.x Mei, 1989, A cysteine-histidine-aspartate catalytic triad is involved in glutamine amide transfer function in purF-type glutamine amidotransferase, J. Biol. Chem., 264, 16613, 10.1016/S0021-9258(19)84750-6 Menkens, 1995, The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bzip proteins, Trends Biochem. Sci., 20, 506, 10.1016/S0968-0004(00)89118-5 Müller, 1993, The nitrogen response of a barley C-hordein promoter is controlled by positive and negative regulation of the GCN4 and endosperm box, Plant J., 4, 343, 10.1046/j.1365-313X.1993.04020343.x Murray, 1980, Rapid isolation of high molecular weight plant DNA, Nucleic Acid. Res., 8, 4321, 10.1093/nar/8.19.4321 Nakai, 1992, A knowledge base for predicting protein localization sites in eukaryotic cells, Genomics, 14, 897, 10.1016/S0888-7543(05)80111-9 Nalbantoglu, 1994, Cloning and sequencing of the gene encoding spinach ferredoxin-dependent glutamate synthase, Biochim. Biophys. Acta, 1183, 557, 10.1016/0005-2728(94)90086-8 Oliver, 1987, Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12, Gene, 60, 1, 10.1016/0378-1119(87)90207-1 Qandt, 1995, MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data, Nucleic Acids Res., 23, 4878, 10.1093/nar/23.23.4878 Rastogi, 1997, Footprinting of the spinach nitrite reductase gene promoter reveals the preservation of nitrate regulatory elements between fungi and higher plants, Plant Mol. Biol., 34, 465, 10.1023/A:1005842812321 Sakakibara, 1991, Molecular cloning and characterization of complementary DNA encoding for ferredoxin-dependent glutamate synthase in maize leaf, J. Biol. Chem., 266, 2028, 10.1016/S0021-9258(18)52204-3 J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning: a Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989. Sanger, 1977, DNA sequencing with chain-terminating inhibitors, Proc. Natl. Acad. Sci. USA, 74, 5463, 10.1073/pnas.74.12.5463 Sechley, 1992, Compartmentation of nitrogen assimilation in higher plants, Int. Rev. Cytol., 134, 85, 10.1016/S0074-7696(08)62028-8 Sessa, 1993, The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities, EMBO J., 12, 3507, 10.1002/j.1460-2075.1993.tb06025.x Stephens, 1983, Nucleotide sequence of the lipoamide dehydrogenase gene of Escherichia coli K12, Eur. J. Biochem., 135, 519, 10.1111/j.1432-1033.1983.tb07683.x Suzuki, 1997, Structure and regulation of ferredoxin-dependent glutamate synthase from Arabidopsis thaliana. Cloning of cDNA expression in different tissues of wild-type and gltS mutant strains, and light induction, Eur. J. Biochem., 243, 708, 10.1111/j.1432-1033.1997.00708.x Tso, 1982, Nucleotide sequence of Escherichia coli purF and deduced amino acid sequence of glutamine phosphoribosylpyrophosphate amidotransferase, J. Biol. Chem., 257, 3525, 10.1016/S0021-9258(18)34810-5 Vance, 1995, Alfalfa NADH-dependent glutamate synthase: structure of the gene and importance in symbiotic N2 fixation, Plant J., 8, 345, 10.1046/j.1365-313X.1995.08030345.x Watanabe, 1996, Expression of NADH-dependent glutamate synthase in response to the supply of nitrogen in rice cells in suspension culture, Plant Cell Physiol., 37, 1034, 10.1093/oxfordjournals.pcp.a029035 Yamaya, 1992, Tissue distribution of glutamate synthase and glutamine synthetase in rice leaves. Occurrence of NADH-dependent glutamate synthase protein and activity in the unexpanded non-green leaf blades, Plant Physiol., 100, 1427, 10.1104/pp.100.3.1427 Yamaya, 1995, A supply of nitrogen causes increase in the level of NADH-dependent glutamate synthase protein and in the activity of the enzyme in roots of rice seedlings, Plant Cell Physiol., 36, 1197 Zehnacker, 1992, Purification and properties of tobacco ferredoxin-dependent glutamate synthase, and isolation of corresponding cDNA clones, Planta, 187, 266, 10.1007/BF00201950