Tối ưu hóa phương pháp xét nghiệm miễn dịch kết tủa cromatin ở loài dây sống biển Ciona

Caputi L, Andreakis N, Mastrototaro F, Cirino P, Vassillo M, Sordino P (2007) Cryptic speciation in a model invertebrate chordate. Proc Natl Acad Sci U S A 104:9364–9369 Chabry L (1887) Contribution a l’embryologie normale et teratologique des Ascidies simples. J Anat Physiol (Paris) 23:167–319 Christiaen L, Wagner E, Shi W, Levine M (2009) Electroporation of transgenic DNAs in the sea squirt Ciona. Cold Spring Harb Protoc pdb.prot5345 Conklin EG (1905) The organization and cell lineage of the ascidian egg. J Acad Nat Sci (Phila) 13:1–119 Corbo JC, Levine M, Zeller RW (1997) Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 124:589–602 Davidson B, Christiaen L (2006) Linking chordate gene networks to cellular behavior in ascidians. Cell 124:247–250 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A et al (2002) The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298:2157–2167 Delsuc F, Brinkmann H, Chourrout D, Philippe H (2006) Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439:965–968 Di Gregorio A, Levine M (1999) Regulation of Ci-tropomyosin-like, a Brachyury target gene in the ascidian, Ciona intestinalis. Development 126:5599–5609 Dunn MP, Di Gregorio A (2009) The evolutionarily conserved leprecan gene: its regulation by Brachyury and its role in the developing Ciona notochord. Dev Biol 328:561–574 Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK (2012) Controls of nucleosome positioning in the human genome. PLoS Genet 8(11):e1003036 Gazdoiu S, Yamoah K, Wu K, Escalante CR, Tappin I, Bermudez V, Aggarwal AK, Hurwitz J, Pan ZQ (2005) Proximity-induced activation of human Cdc34 through heterologous dimerization. Proc Natl Acad Sci U S A 102:15053–15058 Kanda M, Wada H, Fujiwara S (2009) Epidermal expression of Hox1 is directly activated by retinoic acid in the Ciona intestinalis embryo. Dev Biol 335:454–463 Kubo A, Suzuki N, Yuan X, Nakai K, Satoh N, Imai KS, Satou Y (2010) Genomic cis-regulatory networks in the early Ciona intestinalis embryo. Development 137:1613–1623 Lee TI, Johnstone SE, Young RA (2006) Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat Protoc 1:729–748 Lemaire P (2009) Unfolding a chordate developmental program, one cell at a time: invariant cell lineages, short-range inductions and evolutionary plasticity in ascidians. Dev Biol 332:48–60 Nelson JD, Denisenko O, Bomsztyk K (2006) Protocol for the fast chromatin immunoprecipitation (ChIP) method. Nat Protoc 1:179–185 Oda-Ishii I, Di Gregorio A (2007) Lineage-independent mosaic expression and regulation of the Ciona multidom gene in the ancestral notochord. Dev Dyn 236:1806–1819 Passamaneck YJ, Katikala L, Perrone L, Dunn MP, Oda-Ishii I, Di Gregorio A (2009) Direct activation of a notochord cis-regulatory module by Brachyury and FoxA in the ascidian Ciona intestinalis. Development 136:3679–3689 Singer JB, Harbecke R, Kusch T, Reuter R, Lengyel JA (1996) Drosophila brachyenteron regulates gene activity and morphogenesis in the gut. Development 122:3707–3718 Swalla BJ (2006) Building divergent body plans with similar genetic pathways. Heredity (Edinb) 97:235–243 Vinson JP, Jaffe DB, O’Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N et al (2005) Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. Genome Res 15:1127–1135 Vujovic S, Henderson S, Presneau N, Odell E, Jacques TS, Tirabosco R, Boshoff C, Flanagan AM (2006) Brachyury, a crucial regulator of notochordal development, is a novel biomarker for chordomas. J Pathol 209:157–165 Whittaker JR (1977) Segregation during cleavage of a factor determining endodermal alkaline phosphatase development in ascidian embryos. J Exp Zool 202:139–153 Yang XR, Ng D, Alcorta DA, Liebsch NJ, Sheridan E, Li S, Goldstein AM, Parry DM, Kelley MJ (2009) T (brachyury) gene duplication confers major susceptibility to familial chordoma. Nat Genet 41:1176–1178 Yasuo H, Satoh N (1993) Function of vertebrate T gene. Nature 364:582–583 Zega G, Biggiogero M, Groppelli S, Candiani S, Oliveri D, Parodi M, Pestarino M, De Bernardi F, Pennati R (2008) Developmental expression of glutamic acid decarboxylase and of gamma-aminobutyric acid type B receptors in the ascidian Ciona intestinalis. J Comp Neurol 506:489–505 Zeller RW (2004) Generation and use of transgenic ascidian embryos. Methods Cell Biol 74:713–730