Oocyte specific lncRNA variant Rose influences oocyte and embryo development

Non-coding RNA Research - Tập 6 - Trang 107-113 - 2021
Rajan Iyyappan1, Daria Aleshkina1, Linkai Zhu2, Zongliang Jiang2, Veronika Kinterova3, Andrej Susor1
1Laboratory of Biochemistry and Molecular Biology of Germ Cells, Institute of Animal Physiology and Genetics of the Czech Academy of Sciences, Rumburska 89, 277 21, Libechov, Czech Republic
2School of Animal Sciences, AgCenter, Louisiana State University, Baton Rouge, LA, 70820, United States
3Laboratory of Developmental Biology, Institute of Animal Physiology and Genetics of the Czech Academy of Sciences, Rumburska 89, 277 21, Libechov, Czech Republic

Tài liệu tham khảo

Breschi, 2017, Comparative transcriptomics in human and mouse, Nat. Rev. Genet., 18, 425, 10.1038/nrg.2017.19 Mattick, 2006, Non-coding RNA, Hum. Mol. Genet., 15, R17, 10.1093/hmg/ddl046 Zhang, 2019, Mechanisms and functions of long non-coding RNAs at multiple regulatory levels, Int. J. Mol. Sci., 20, 5573, 10.3390/ijms20225573 He, 2019, Emerging roles of lncRNAs in the post-transcriptional regulation in cancer, Genes Dis, 6, 6, 10.1016/j.gendis.2019.01.003 Charon, 2010, Non-protein-coding RNAs and their interacting RNA-binding proteins in the plant cell nucleus, Mol. Plant, 3, 729, 10.1093/mp/ssq037 Ulitsky, 2013, XLincRNAs: genomics, evolution, and mechanisms, Cell, 154, 26, 10.1016/j.cell.2013.06.020 Chen, 2016, Linking long noncoding RNA localization and function, Trends Biochem. Sci., 41, 761, 10.1016/j.tibs.2016.07.003 Joshi, 2020, Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility, Reprod. Biol. Endocrinol., 18, 1, 10.1186/s12958-020-00660-6 Lee, 2012, Identification of novel long noncoding RNA transcripts in male germ cells, Methods Mol. Biol., 825, 105, 10.1007/978-1-61779-436-0_9 Ganesh, 2020, The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution, Nucleic Acids Res., 48, 3211, 10.1093/nar/gkz1239 Tetkova, 2019, Spatio-temporal expression of ANK2 promotes cytokinesis in oocytes, Sci. Rep., 9, 1, 10.1038/s41598-019-49483-5 Masek, 2020, Identifying the translatome of mouse NEBD-stage oocytes via SSP-profiling; A novel polysome fractionation method, Int. J. Mol. Sci., 21, 1254, 10.3390/ijms21041254 Heninger, 2007, Production of endoribonuclease-prepared short interfering RNAs (esiRNAs) for specific and effective gene silencing in mammalian cells, Cold Spring Harb. Protoc., 10.1101/pdb.prot4824 Mann, 2017, IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions, Nucleic Acids Res., 45, 435, 10.1093/nar/gkx279 Wang, 2013, CPAT: coding-potential assessment tool using an alignment-free logistic regression model, Nucleic Acids Res. Lecuyer, 2008, Global analysis of mRNA localization reveals a prominent role in the organization of cellular architecture and function, Dev. Biol., 131, 174 Aleshkina, 2021, ncRNA BC1 influences translation in the oocyte, RNA Biol., 10.1080/15476286.2021.1880181 Pintacuda, 2017, Function by structure: spotlights on xist long non-coding RNA, Front. Mol. Biosci., 4, 90, 10.3389/fmolb.2017.00090 Honda, 2018, Oocyte-specific gene Oog1 suppresses the expression of spermatogenesis-specific genes in oocytes, J. Reprod. Dev., 64, 297, 10.1262/jrd.2018-024 Jansova, 2018, Localization of RNA and translation in the mammalian oocyte and embryo, PloS One, 13, 10.1371/journal.pone.0192544 Philpott, 1987, Oocyte-specific expression and developmental regulation of ZP3, the sperm receptor of the mouse zona pellucida, Dev. Biol., 121, 568, 10.1016/0012-1606(87)90192-8 Liang, 1997, FIGα, a germ cell specific transcription factor involved in the coordinate expression of the zona pellucida genes, Development, 124, 4939, 10.1242/dev.124.24.4939 McGrath, 1995, Oocyte-specific expression of growth/differentiation factor-9, Mol. Endocrinol., 9, 131 Washietl, 2014, Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals, Genome Res., 24, 616, 10.1101/gr.165035.113 Gudenas, 2018, Prediction of LncRNA subcellular localization with deep learning from sequence features, Sci. Rep., 10.1038/s41598-018-34708-w Tantale, 2016, A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting, Nat. Commun., 10.1038/ncomms12248 Miao, 2019, A long noncoding RNA distributed in both nucleus and cytoplasm operates in the PYCARD-regulated apoptosis by coordinating the epigenetic and translational regulation, PLoS Genet., 10.1371/journal.pgen.1008144 Fatica, 2014, Long non-coding RNAs: New players in cell differentiation and development, Nat. Rev. Genet., 15, 7, 10.1038/nrg3606 Verheyden, 2019, Control of nucleolar stress and translational reprogramming by lncRNAs, Cell Stress, 3, 19, 10.15698/cst2019.01.172 Carlevaro-Fita, 2016, Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells, RNA, 22, 867, 10.1261/rna.053561.115 Nakagawa, 2011, Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice, J. Cell Biol., 193, 31, 10.1083/jcb.201011110