Nucleotide sequence and results of test of adaptive evolution in the α-globin gene of octodontoid rodents

I.H. Tomasco, N. Boullosa, F.G. Hoffmann, E.P. Lessa, Molecular Adaptive Convergence in the α-Globin Gene in Subterranean Octodontid Rodents, 628, 2017, pp. 275–280. http://dx.doi.org/10.1016/j.gene.2017.07.057. Woolley, 2003, TreeSAAP: selection on amino acid properties using phylogenetic trees, Bioinformatics, 19, 671, 10.1093/bioinformatics/btg043 Murrell, 2012, Detecting individual sites subject to episodic diversifying selection, PLoS Genet., 8, 10.1371/journal.pgen.1002764 Tomasco, 2011, The evolution of mitochondrial genomes in subterranean caviomorph rodents: adaptation against a background of purifying selection, Mol. Phylogenet. Evol., 61, 64, 10.1016/j.ympev.2011.06.014 Miller, 1988, A simple salting procedure for extracting DNA from human nucleated cells, Nucleic Acids Res., 16, 215, 10.1093/nar/16.3.1215 Delport, 2010, Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology, Bioinformatics, 26, 2455, 10.1093/bioinformatics/btq429 Keane, 2006, Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified, BMC Evol. Biol., 6, 29, 10.1186/1471-2148-6-29 Yang, 1997, PAML: a program package for phylogenetic analysis by maximum likelihood, Comput. Appl. Biosci., 13, 555 Saccone, 1990, Influence of base composition on quantitative estimates of gene evolution, Methods Enzymol., 19, 1572 Upham, 2012, Diversification and biogeography of the Neotropical caviomorph lineage Octodontoidea (Rodentia: hystricognathi), Mol. Phylogenet. Evol., 63, 417, 10.1016/j.ympev.2012.01.020 Parada, 2011, Species groups and the evolutionary diversification of tuco-tucos, genus Ctenomys (Rodentia: ctenomyidae), J. Mammal., 92, 671, 10.1644/10-MAMM-A-121.1