Nuclear actin dynamics in gene expression and genome organization

Seminars in Cell & Developmental Biology - Tập 102 - Trang 105-112 - 2020
Salla Kyheröinen1, Maria K. Vartiainen1
1Institute of Biotechnology, Helsinki Institute for Life Science, University of Helsinki, Viikinkaari 5, 00014, Helsinki, Finland

Tài liệu tham khảo

Lane, 1969, Intranuclear fibrillar bodies in actinomycin D-treated oocytes, J. Cell Biol., 40, 286, 10.1083/jcb.40.1.286 Egly, 1984, Is actin a transcription initiation factor for RNA polymerase B?, EMBO J., 3, 2363, 10.1002/j.1460-2075.1984.tb02141.x Ohnishi, 1964, Actin and myosin-like proteins in the calf thymus cell nucleus, J. Biochem., 56, 6, 10.1093/oxfordjournals.jbchem.a127959 Virtanen, 2017, Diverse functions for different forms of nuclear actin, Curr. Opin. Cell Biol., 46, 33, 10.1016/j.ceb.2016.12.004 Dopie, 2012, Active maintenance of nuclear actin by importin 9 supports transcription, Proc. Natl. Acad. Sci. U. S. A., 109, E544, 10.1073/pnas.1118880109 Stuven, 2003, Exportin 6: a novel nuclear export receptor that is specific for profilin.actin complexes, EMBO J., 22, 5928, 10.1093/emboj/cdg565 Spencer, 2011, Depletion of nuclear actin is a key mediator of quiescence in epithelial cells, J. Cell. Sci., 124, 123, 10.1242/jcs.073197 Xu, 2010, Nuclear translocation of beta-actin is involved in transcriptional regulation during macrophage differentiation of HL-60 cells, Mol. Biol. Cell, 21, 811, 10.1091/mbc.e09-06-0534 Huet, 2013, Actin-regulated feedback loop based on Phactr4, PP1 and cofilin maintains the actin monomer pool, J. Cell. Sci., 126, 497, 10.1242/jcs.113241 Skarp, 2013, Steady-state nuclear actin levels are determined by export competent actin pool, Cytoskeleton (Hoboken), 70, 623, 10.1002/cm.21116 Grosse, 2013, To be or not to be assembled: progressing into nuclear actin filaments, Nat. Rev. Mol. Cell Biol., 14, 693, 10.1038/nrm3681 Kristo, 2016, Actin, actin-binding proteins, and actin-related proteins in the nucleus, Histochem. Cell Biol., 145, 373, 10.1007/s00418-015-1400-9 Plessner, 2019, Dynamizing nuclear actin filaments, Curr. Opin. Cell Biol., 56, 1, 10.1016/j.ceb.2018.08.005 McDonald, 2006, Nucleoplasmic beta-actin exists in a dynamic equilibrium between low-mobility polymeric species and rapidly diffusing populations, J. Cell Biol., 172, 541, 10.1083/jcb.200507101 Belin, 2013, Visualization of actin filaments and monomers in somatic cell nuclei, Mol. Biol. Cell, 24, 982, 10.1091/mbc.e12-09-0685 Baarlink, 2013, Nuclear actin network assembly by formins regulates the SRF coactivator MAL, Science, 340, 864, 10.1126/science.1235038 Riedl, 2008, Lifeact: a versatile marker to visualize F-actin, Nat. Methods, 5, 605, 10.1038/nmeth.1220 Plessner, 2015, Nuclear F-actin formation and reorganization upon cell spreading, J. Biol. Chem., 290, 11209, 10.1074/jbc.M114.627166 Belin, 2015, DNA damage induces nuclear actin filament assembly by formin-2 and Spire-1/2 that promotes efficient DNA repair, eLife, 4 Wang, 2017, DNA damage causes rapid accumulation of phosphoinositides for ATR signaling, Nat. Commun., 8, 2118, 10.1038/s41467-017-01805-9 Chiolo, 2011, Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair, Cell, 144, 732, 10.1016/j.cell.2011.02.012 Caridi, 2018, Nuclear F-actin and myosins drive relocalization of heterochromatic breaks, Nature, 559, 54, 10.1038/s41586-018-0242-8 Schrank, 2018, Nuclear ARP2/3 drives DNA break clustering for homology-directed repair, Nature, 559, 61, 10.1038/s41586-018-0237-5 Chuang, 2006, Long-range directional movement of an interphase chromosome site, Curr. Biol., 16, 825, 10.1016/j.cub.2006.03.059 Dundr, 2007, Actin-dependent intranuclear repositioning of an active gene locus in vivo, J.Cell Biol., 179, 1095, 10.1083/jcb.200710058 Khanna, 2014, HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation, Curr. Biol., 24, 1138, 10.1016/j.cub.2014.03.053 Mehta, 2010, Rapid chromosome territory relocation by nuclear motor activity in response to serum removal in primary human fibroblasts, Genome Biol., 11, R5, 10.1186/gb-2010-11-1-r5 Kulashreshtha, 2016, Chromosome territory relocation during DNA repair requires nuclear myosin 1 recruitment to chromatin mediated by Upsilon-H2AX signaling, Nucleic Acids Res., 44, 8272, 10.1093/nar/gkw573 Parisis, 2017, Initiation of DNA replication requires actin dynamics and formin activity, EMBO J., 36, 3212, 10.15252/embj.201796585 Baarlink, 2017, A transient pool of nuclear F-actin at mitotic exit controls chromatin organization, Nat. Cell Biol., 19, 1389, 10.1038/ncb3641 Liu, 2018, Nuclear actin polymerized by mDia2 confines centromere movement during CENP-A loading, iScience, 9, 314, 10.1016/j.isci.2018.10.031 Liu, 2016, Diaphanous formin mDia2 regulates CENP-A levels at centromeres, J. Cell Biol., 213, 415, 10.1083/jcb.201512034 Zhao, 1998, Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling, Cell, 95, 625, 10.1016/S0092-8674(00)81633-5 Shen, 2000, A chromatin remodelling complex involved in transcription and DNA processing, Nature, 406, 541, 10.1038/35020123 Ikura, 2000, Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis, Cell, 102, 463, 10.1016/S0092-8674(00)00051-9 Cai, 2005, The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes, J. Biol. Chem., 280, 13665, 10.1074/jbc.M500001200 Mizuguchi, 2004, ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex, Science, 303, 343, 10.1126/science.1090701 Cao, 2016, Crystal structure of a nuclear actin ternary complex, Proc. Natl. Acad. Sci. U. S. A., 113, 8985, 10.1073/pnas.1602818113 Fenn, 2011, Structural biochemistry of nuclear actin-related proteins 4 and 8 reveals their interaction with actin, EMBO J., 30, 2153, 10.1038/emboj.2011.118 Muller, 2005, Sequence and comparative genomic analysis of actin-related proteins, Mol. Biol. Cell, 16, 5736, 10.1091/mbc.e05-06-0508 Oma, 2011, Actin-related proteins localized in the nucleus: from discovery to novel roles in nuclear organization, Nucleus, 2, 38 Harata, 2000, Multiple actin-related proteins of Saccharomyces cerevisiae are present in the nucleus, J. Biochem., 128, 665, 10.1093/oxfordjournals.jbchem.a022799 Tsopoulidis, 2019, T cell receptor-triggered nuclear actin network formation drives CD4(+) T cell effector functions, Sci. Immunol., 4, 10.1126/sciimmunol.aav1987 Szerlong, 2008, The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases, Nat. Struct. Mol. Biol., 15, 469, 10.1038/nsmb.1403 Kapoor, 2013, Evidence for monomeric actin function in INO80 chromatin remodeling, Nat. Struct. Mol. Biol., 20, 426, 10.1038/nsmb.2529 Knoll, 2018, The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling, Nat. Struct. Mol. Biol., 25, 823, 10.1038/s41594-018-0115-8 Nishimoto, 2012, Heterocomplex formation by Arp4 and beta-actin is involved in the integrity of the Brg1 chromatin remodeling complex, J. Cell. Sci., 125, 3870, 10.1242/jcs.104349 Kapoor, 2014, Mechanisms of nuclear actin in chromatin-remodeling complexes, Trends Cell Biol., 24, 238, 10.1016/j.tcb.2013.10.007 Shen, 2003, Involvement of actin-related proteins in ATP-dependent chromatin remodeling, Mol. Cell, 12, 147, 10.1016/S1097-2765(03)00264-8 Xie, 2018, Beta-Actin-dependent global chromatin organization and gene expression programs control cellular identity, FASEB J., 32, 1296, 10.1096/fj.201700753R Xie, 2018, Beta-actin regulates a heterochromatin landscape essential for optimal induction of neuronal programs during direct reprograming, PLoS Genet., 14, 10.1371/journal.pgen.1007846 Rando, 2002, Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex, Proc. Natl. Acad. Sci. U. S. A., 99, 2824, 10.1073/pnas.032662899 Chang, 2018, The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ, Nature, 563, 265, 10.1038/s41586-018-0658-1 Viita, 2019, Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing, J. Cell. Sci., 10.1242/jcs.226852 Serebryannyy, 2016, A role for nuclear actin in HDAC 1 and 2 regulation, Sci. Rep., 6, 28460, 10.1038/srep28460 Huff, 2004, Nuclear localisation of the G-actin sequestering peptide thymosin beta4, J. Cell. Sci., 117, 5333, 10.1242/jcs.01404 Skare, 2003, Profilin I colocalizes with speckles and Cajal bodies: a possible role in pre-mRNA splicing, Exp.Cell Res., 286, 12, 10.1016/S0014-4827(03)00102-2 Cao, 2018, Modulation of formin processivity by profilin and mechanical tension, eLife, 7, 10.7554/eLife.34176 Vartiainen, 2007, Nuclear actin regulates dynamic subcellular localization and activity of the SRF cofactor MAL, Science, 316, 1749, 10.1126/science.1141084 Mouilleron, 2011, Structure of a pentavalent G-actin*MRTF-A complex reveals how G-actin controls nucleocytoplasmic shuttling of a transcriptional coactivator, Sci. Signal., 4, ra40, 10.1126/scisignal.2001750 Pawlowski, 2010, An actin-regulated importin alpha/beta-dependent extended bipartite NLS directs nuclear import of MRTF-A, EMBO J., 29, 3448, 10.1038/emboj.2010.216 Ho, 2013, Lamin A/C and emerin regulate MKL1-SRF activity by modulating actin dynamics, Nature, 497, 507, 10.1038/nature12105 Holaska, 2004, Emerin caps the pointed end of actin filaments: evidence for an actin cortical network at the nuclear inner membrane, PLoS Biol., 2, E231, 10.1371/journal.pbio.0020231 Le, 2016, Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment, Nat. Cell Biol., 18, 864, 10.1038/ncb3387 Simon, 2010, Direct actin binding to A- and B-type lamin tails and actin filament bundling by the lamin A tail, Nucleus, 1, 264, 10.4161/nucl.11799 Lundquist, 2014, Redox modification of nuclear actin by MICAL-2 regulates SRF signaling, Cell, 156, 563, 10.1016/j.cell.2013.12.035 Chatzifrangkeskou, 2019, RASSF1A is required for the maintenance of nuclear actin levels, EMBO J., 38, 10.15252/embj.2018101168 Kircher, 2015, Filamin A interacts with the coactivator MKL1 to promote the activity of the transcription factor SRF and cell migration, Sci. Signal., 8, ra112, 10.1126/scisignal.aad2959 Panayiotou, 2016, Phosphorylation acts positively and negatively to regulate MRTF-A subcellular localisation and activity, eLife, 5, 10.7554/eLife.15460 Fomproix, 2004, An actin-myosin complex on actively transcribing genes, Exp. Cell Res., 294, 140, 10.1016/j.yexcr.2003.10.028 Smith, 1979, Actin co-purifies with RNA polymerase II, Biochem.Biophys.Res.Commun., 86, 161, 10.1016/0006-291X(79)90395-4 Hu, 2004, A role for beta-actin in RNA polymerase III transcription, Genes Dev., 18, 3010, 10.1101/gad.1250804 Tian, 2016, β-Actin regulates interleukin 6-induced p21 transcription by interacting with the Rpb5 and Rpb7 subunits of RNA polymerase II, Animal Cells Syst. (Seoul), 20, 282, 10.1080/19768354.2016.1224204 Sokolova, 2018, Nuclear actin is required for transcription during Drosophila oogenesis, iScience, 9, 63, 10.1016/j.isci.2018.10.010 Almuzzaini, 2016, In beta-actin knockouts, epigenetic reprogramming and rDNA transcription inactivation lead to growth and proliferation defects, FASEB J., 30, 2860, 10.1096/fj.201600280R Philimonenko, 2004, Nuclear actin and myosin I are required for RNA polymerase I transcription, Nat. Cell Biol., 6, 1165, 10.1038/ncb1190 Fiore, 2017, Laminin-111 and the level of nuclear actin regulate epithelial quiescence via Exportin-6, Cell Rep., 19, 2102, 10.1016/j.celrep.2017.05.050 Hofmann, 2004, Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II, Nat. Cell Biol., 6, 1094, 10.1038/ncb1182 Qi, 2011, G-actin participates in RNA polymerase II-dependent transcription elongation by recruiting positive transcription elongation factor b (P-TEFb), J. Biol. Chem., 286, 15171, 10.1074/jbc.M110.184374 Kukalev, 2005, Actin and hnRNP U cooperate for productive transcription by RNA polymerase II, Nat. Struct. Mol. Biol., 12, 238, 10.1038/nsmb904 Obrdlik, 2008, The histone acetyltransferase PCAF associates with actin and hnRNP U for RNA polymerase II transcription, Mol. Cell. Biol., 28, 6342, 10.1128/MCB.00766-08 Quaresma, 2016, Cracking the control of RNA polymerase II elongation by 7SK snRNP and P-TEFb, Nucleic Acids Res., 44, 7527, 10.1093/nar/gkw585 Ye, 2008, Nuclear myosin I acts in concert with polymeric actin to drive RNA polymerase I transcription, Genes Dev., 22, 322, 10.1101/gad.455908 de Lanerolle, 2012, Nuclear actin and myosins at a glance, J. Cell. Sci., 125, 4945, 10.1242/jcs.099754 Nevzorov, 2018, Myosin-1C uses a novel phosphoinositide-dependent pathway for nuclear localization, EMBO Rep., 19, 290, 10.15252/embr.201744296 Sarshad, 2013, Nuclear myosin 1c facilitates the chromatin modifications required to activate rRNA gene transcription and cell cycle progression, PLoS Genet., 9, 10.1371/journal.pgen.1003397 Sarshad, 2014, Glycogen synthase kinase (GSK) 3beta phosphorylates and protects nuclear myosin 1c from proteasome-mediated degradation to activate rDNA transcription in early G1 cells, PLoS Genet., 10, 10.1371/journal.pgen.1004390 Almuzzaini, 2015, Nuclear myosin 1 contributes to a chromatin landscape compatible with RNA polymerase II transcription activation, BMC Biol., 13, 35, 10.1186/s12915-015-0147-z Lindsay, 2009, Myosin Vb localises to nucleoli and associates with the RNA polymerase I transcription complex, Cell Motil. Cytoskeleton, 10.1002/cm.20408 Li, 2009, Nuclear myosin II regulates the assembly of preinitiation complex for ICAM-1 gene transcription, Gastroenterology, 137, 10.1053/j.gastro.2009.03.040 Wu, 2006, Regulation of RNA-polymerase-II-dependent transcription by N-WASP and its nuclear-binding partners, Nat. Cell Biol., 8, 756, 10.1038/ncb1433 Obrdlik, 2011, The F-actin severing protein cofilin-1 is required for RNA polymerase II transcription elongation, Nucleus, 2, 72, 10.4161/nucl.14508 Miyamoto, 2011, Nuclear actin polymerization is required for transcriptional reprogramming of Oct4 by oocytes, Genes Dev., 25, 946, 10.1101/gad.615211 Miyamoto, 2013, Nuclear Wave1 is required for reprogramming transcription in oocytes and for normal development, Science, 341, 1002, 10.1126/science.1240376 Serebryannyy, 2016, Persistent nuclear actin filaments inhibit transcription by RNA polymerase II, J. Cell. Sci., 129, 3412, 10.1242/jcs.195867 Varland, 2019, Actin post-translational modifications: the Cinderella of cytoskeletal control, Trends Biochem. Sci., 44, 502, 10.1016/j.tibs.2018.11.010