Novel switchable ECF sigma factor transcription system for improving thaxtomin A production in Streptomyces
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Healy, 2000, The txtAB genes of the plant pathogen Streptomyces acidiscabies encode a peptide synthetase required for phytotoxin thaxtomin A production and pathogenicity, Mol Microbiol, 38, 794, 10.1046/j.1365-2958.2000.02170.x
Johnson, 2009, 4-Nitrotryptophan is a substrate for the non-ribosomal peptide synthetase TxtB in the thaxtomin A biosynthetic pathway, Mol Microbiol, 73, 409, 10.1111/j.1365-2958.2009.06780.x
King, 2009, The thaxtomin phytotoxins: sources, synthesis, biosynthesis, biotransformation and biological activity, Phytochemistry, 70, 833, 10.1016/j.phytochem.2009.04.013
Zhang, 2018, Genetic background affects pathogenicity island function and pathogen emergence in Streptomyces, Mol Plant Pathol, 19, 1733, 10.1111/mpp.12656
Jiang, 2018, High-yield production of herbicidal thaxtomins and thaxtomin analogs in a nonpathogenic Streptomyces strain, Appl Environ Microbiol, 84, 10.1128/AEM.00164-18
Bibb, 1994, The mRNA for the 23S rRNA methylase encoded by the ermE gene of Saccharopolyspora erythraea is translated in the absence of a conventional ribosome-binding site, Mol Microbiol, 14, 533, 10.1111/j.1365-2958.1994.tb02187.x
Labes, 1997, Isolation and characterization of a strong promoter element from the Streptomyces ghanaensis phage I19 using the gentamicin resistance gene (aacC1) of Tn 1696 as reporter, Microbiology (Reading), 143, 1503, 10.1099/00221287-143-5-1503
Wang, 2013, An engineered strong promoter for streptomycetes, Appl Environ Microbiol, 79, 4484, 10.1128/AEM.00985-13
Myronovskyi, 2016, Native and engineered promoters in natural product discovery, Nat Prod Rep, 33, 1006, 10.1039/C6NP00002A
Sun, 2017, Connecting metabolic pathways: sigma factors in Streptomyces spp, Front Microbiol, 8, 2546, 10.3389/fmicb.2017.02546
Zhang, 2016, Engineering microbial hosts for production of bacterial natural products, Nat Prod Rep, 33, 963, 10.1039/C6NP00017G
Bibb, 2012, Expression of the chaplin and rodlin hydrophobic sheath proteins in Streptomyces venezuelae is controlled by sigma(BldN) and a cognate anti-sigma factor, RsbN, Mol Microbiol, 84, 1033, 10.1111/j.1365-2958.2012.08070.x
Ho, 2019, Activation of the extracytoplasmic function sigma factor sigma(P) by beta-Lactams in Bacillus thuringiensis requires the site-2 Protease RasP, mSphere, 4, 10.1128/mSphere.00511-19
Sineva, 2017, Themes and variations in gene regulation by extracytoplasmic function (ECF) sigma factors, Curr Opin Microbiol, 36, 128, 10.1016/j.mib.2017.05.004
Staron, 2009, The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family, Mol Microbiol, 74, 557, 10.1111/j.1365-2958.2009.06870.x
Li, 2019, Structural basis for transcription initiation by bacterial ECF sigma factors, Nat Commun, 10, 1153, 10.1038/s41467-019-09096-y
Todor, 2020, Rewiring the specificity of extracytoplasmic function sigma factors, Proc Natl Acad Sci U S A, 117, 33496, 10.1073/pnas.2020204117
Rhodius, 2013, Design of orthogonal genetic switches based on a crosstalk map of sigmas, anti-sigmas, and promoters, Mol Syst Biol, 9, 702, 10.1038/msb.2013.58
Pinto, 2018, Engineering orthogonal synthetic timer circuits based on extracytoplasmic function sigma factors, Nucleic Acids Res, 46, 7450, 10.1093/nar/gky614
Zong, 2017, Insulated transcriptional elements enable precise design of genetic circuits, Nat Commun, 8, 52, 10.1038/s41467-017-00063-z
Pinto, 2020, An expanded library of orthogonal split inteins enables modular multi-peptide assemblies, Nat Commun, 11, 1529, 10.1038/s41467-020-15272-2
Hou, 2020, Rewiring carbon flux in Escherichia coli using a bifunctional molecular switch, Metab Eng, 61, 47, 10.1016/j.ymben.2020.05.004
Murakami, 1989, Thiostrepton-induced gene expression in Streptomyces lividans, J Bacteriol, 171, 1459, 10.1128/jb.171.3.1459-1466.1989
Hindle, 1994, Substrate induction and catabolite repression of the streptomyces-coelicolor glycerol operon are mediated through the gylr protein, Mol Microbiol, 12, 737, 10.1111/j.1365-2958.1994.tb01061.x
Herai, 2004, Hyper-inducible expression system for streptomycetes, Proc Natl Acad Sci U S A, 101, 14031, 10.1073/pnas.0406058101
Wang, 2016, Development of a synthetic oxytetracycline-inducible expression system for streptomycetes using de Novo characterized genetic parts, ACS Synth Biol, 5, 765, 10.1021/acssynbio.6b00087
Noguchi, 2018, Development of a strictly regulated xylose-induced expression system in Streptomyces, Microb Cell Factories, 17, 10.1186/s12934-018-0991-y
Rodriguez-Garcia, 2005, Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces, Nucleic Acids Res, 33, 10.1093/nar/gni086
Horbal, 2014, Novel and tightly regulated resorcinol and cumate-inducible expression systems for Streptomyces and other actinobacteria, Appl Microbiol Biotechnol, 98, 8641, 10.1007/s00253-014-5918-x
Palazzotto, 2019, Synthetic biology and metabolic engineering of actinomycetes for natural product discovery, Biotechnol Adv, 37, 107366, 10.1016/j.biotechadv.2019.03.005
Ji, 2019, Synthetic inducible regulatory systems optimized for the modulation of secondary metabolite production in Streptomyces, ACS Synth Biol, 8, 577, 10.1021/acssynbio.9b00001
Flett, 1997, High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes, FEMS Microbiol Lett, 155, 223, 10.1111/j.1574-6968.1997.tb13882.x
Chater, 1976, Restriction of a bacteriophage of streptomyces-albus G involving endonuclease sali, J Bacteriol, 128, 644, 10.1128/jb.128.2.644-650.1976
Lanka, 1995, DNA processing reactions in bacterial conjugation, Annu Rev Biochem, 64, 141, 10.1146/annurev.bi.64.070195.001041
Engler, 2009, Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes, PLoS One, 4, 10.1371/journal.pone.0005553
Morita, 2009, The site-specific recombination system of actinophage TG1, FEMS Microbiol Lett, 297, 234, 10.1111/j.1574-6968.2009.01683.x
Combes, 2002, The Streptomyces genome contains multiple pseudo-attB sites for the phi C31-encoded site-specific recombination system, J Bacteriol, 184, 5746, 10.1128/JB.184.20.5746-5752.2002
Hou, 2018, Engineering the ultrasensitive transcription factors by fusing a modular oligomerization domain, ACS Synth Biol, 7, 1188, 10.1021/acssynbio.7b00414
Bai, 2015, Exploiting a precise design of universal synthetic modular regulatory elements to unlock the microbial natural products in Streptomyces, 112, 12181
Salis, 2009, Automated design of synthetic ribosome binding sites to control protein expression, Nat Biotechnol, 27, 946, 10.1038/nbt.1568
Zhao, 2022, Multiplexed promoter engineering for improving thaxtomin A production in heterologous Streptomyces hosts, Life, 12, 10.3390/life12050689
Perez-Rueda, 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12, Nucleic Acids Res, 28, 1838, 10.1093/nar/28.8.1838
Brophy, 2014, Principles of genetic circuit design, Nat Methods, 11, 508, 10.1038/nmeth.2926
Reis, 2019, Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays, Nat Biotechnol, 37, 1294, 10.1038/s41587-019-0286-9
Hammer, 2006, Synthetic promoter libraries - tuning of gene expression, Trends Biotechnol, 24, 53, 10.1016/j.tibtech.2005.12.003
Craney, 2013, Towards a new science of secondary metabolism, J Antibiot, 66, 387, 10.1038/ja.2013.25
Liu, 2013, Molecular regulation of antibiotic biosynthesis in Streptomyces, Microbiol Mol Biol Rev, 77, 112, 10.1128/MMBR.00054-12
van Wezel, 2009, Applying the genetics of secondary metabolism in model actinomycetes to the discovery of new antibiotics, complex enzymes in microbial natural product biosynthesis, Part A: Overv Artic Pept, 458, 117
Guet, 2002, Combinatorial synthesis of genetic networks, Science, 296, 1466, 10.1126/science.1067407
Morey, 2012, Crosstalk between endogenous and synthetic components - synthetic signaling meets endogenous components, Biotechnol J, 7, 846, 10.1002/biot.201100487
Stanton, 2014, Genomic mining of prokaryotic repressors for orthogonal logic gates, Nat Chem Biol, 10, 99, 10.1038/nchembio.1411
Temme, 2012, Modular control of multiple pathways using engineered orthogonal T7 polymerases, Nucleic Acids Res, 40, 8773, 10.1093/nar/gks597