Novel protein–protein interactions between Entamoeba histolytica d-phosphoglycerate dehydrogenase and phosphoserine aminotransferase
Tài liệu tham khảo
Srere, 1990, Enzyme–enzyme interactions and their metabolic role, FEBS. Lett., 268, 360, 10.1016/0014-5793(90)81286-W
Srere, 1987, Complexes of sequential metabolic enzymes, Ann. Rev. Biochem., 56, 89, 10.1146/annurev.bi.56.070187.000513
Robinson, 1985, Organization of Krebs tricarboxylic acid cycle enzymes, Biochem. Med., 33, 149, 10.1016/0006-2944(85)90023-7
Huang, 2001, Channeling of substrates and intermediates in enzyme-catalyzed reactions, Annu. Rev. Biochem., 70, 149, 10.1146/annurev.biochem.70.1.149
Sumegi, 1991, Is there tight channelling in the tricarboxylic acid cycle metabolon?, Biochem. Soc. Trans., 19, 1002, 10.1042/bst0191002
Morgunov, 1998, Interaction between citrate synthase and malate dehydrogenase. Substrate channeling of oxaloacetate, J. Biol. Chem., 273, 29540, 10.1074/jbc.273.45.29540
Velot, 1999, Metabolic effects of mislocalized mitochondrial and peroxisomal citrate synthases in yeast Saccharomyces cerevisiae, Biochemistry, 38, 16195, 10.1021/bi991695n
Igor, 2009, The binding of citrate synthase and malate dehydrogenase with the inner mitochondrial membrane, J. Biomol. Struct. Dyn., 26, 870
Ali, 2004, Molecular and biochemical characterization of D-phosphoglycerate dehydrogenase from Entamoeba histolytica. A unique enteric protozoan parasite that possesses both phosphorylated and nonphosphorylated serine metabolic pathways, FEBS. J., 271, 2670, 10.1111/j.1432-1033.2004.04195.x
V. Mishra, A. Kumar, V. Ali, T. Nozaki, K.Y. Zhang, V. Bhakuni, Glu-108 is essential for subunit assembly and dimer stability of d-phosphoglycerate dehydrogenase from Entamoeba histolytica, Mol. Biochem. Parasitol. (2011) Oct 23 Epub ahead of print.
Mishra, 2010, Entamoeba histolytica phosphoserine aminotransferase (EhPSAT): insights into the structure–function relationship, BMC, Res. Notes, 3, 52, 10.1186/1756-0500-3-52
V. Mishra, A. Kumar, V. Ali, T. Nozaki, K.Y. Zhang, V. Bhakuni, Role of conserved active site tryptophan-101 in functional activity and stability of phosphoserine aminotransferase from an enteric human parasite, Amino Acids. (2011) Oct29 Epub ahead of print.
Sali, 1993, Comparative protein modelling by satisfaction of spatial restraints, J. Mol. Biol., 234, 779, 10.1006/jmbi.1993.1626
Schneidman-Duhovny, 2005, PatchDock and SymmDock: servers for rigid and symmetric docking, Nucleic Acids Res., 33, W363, 10.1093/nar/gki481
Gray, 2003, Protein–protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations, J. Mol. Biol., 331, 281, 10.1016/S0022-2836(03)00670-3
Simons, 1997, Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions, J. Mol. Biol., 268, 209, 10.1006/jmbi.1997.0959
Simons, 1999, Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins, Proteins, 34, 82, 10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A
Gray, 2003, Protein-protein docking predictions for the CAPRI experiment, Proteins, 52, 118, 10.1002/prot.10384
Lazaridis, 1999, Effective energy function for proteins in solution, Proteins, 35, 133, 10.1002/(SICI)1097-0134(19990501)35:2<133::AID-PROT1>3.0.CO;2-N
Kortemme, 2003, An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes, J. Mol. Biol., 326, 1239, 10.1016/S0022-2836(03)00021-4
Tom Darden, 1993, Particle mesh Ewald: an N-log(N) method for Ewald sums in large systems, J. Chem. Phys., 98, 10089, 10.1063/1.464397
Ryckaert, 1977, Numerical-integration of Cartesian Equations of motion of a system with constraints – molecular-dynamics of N-alkanes, J. Comput. Phys., 23, 327, 10.1016/0021-9991(77)90098-5
Case, 2005, The Amber biomolecular simulation programs, J. Comput. Chem., 26, 1668, 10.1002/jcc.20290
Andrade, 1993, Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network, Protein Eng., 6, 383, 10.1093/protein/6.4.383
Lakowicz, 2006
Hearl, 1984, Interactions between 4-aminobutyrate aminotransferase and succinic semialdehyde dehydrogenase, two mitochondrial enzymes, J. Biol. Chem., 259, 11459, 10.1016/S0021-9258(18)90883-5
Laskowski, 1993, PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Cryst, 26, 283, 10.1107/S0021889892009944
Ovadi, 1996, Metabolic consequences of enzyme interactions, Cell. Biochem. Funct., 14, 249, 10.1002/cbf.699
Ovadi, 2000, Macromolecular compartmentation and channeling, Int. Rev. Cytol., 192, 255, 10.1016/S0074-7696(08)60529-X
Spivey, 1999, Substrate channeling, Methods, 19, 306, 10.1006/meth.1999.0858
Shallom, 1999, Essential protein-protein interactions between Plasmodium falciparum thymidylate synthase and dihydrofolate reductase domains, J. Biol. Chem., 274, 37781, 10.1074/jbc.274.53.37781
Tompa, 1987, Quantitation of the interaction between citrate synthase and malate dehydrogenase, J. Biol. Chem., 262, 6089, 10.1016/S0021-9258(18)45541-X
Islam, 2010, Branched-chain amino acid metabolon: interaction of glutamate dehydrogenase with the mitochondrial branched-chain aminotransferase (BCATm), J. Biol. Chem., 285, 265, 10.1074/jbc.M109.048777
Nogaj, 2005, Physical and kinetic interactions between glutamyl-tRNA reductase and glutamate-1-semialdehyde aminotransferase of Chlamydomonas reinhardtii, J.Biol. Chem., 280, 24301, 10.1074/jbc.M502483200
Bulow, 1987, Characterization of an artificial bifunctional enzyme, beta-galactosidase/galactokinase, prepared by gene fusion, FEBS J., 163, 443, 10.1111/j.1432-1033.1987.tb10889.x
Ljungcrantz, 1989, Construction of an artificial bifunctional enzyme, beta-galactosidase/galactose dehydrogenase, exhibiting efficient galactose channeling, Biochemistry, 28, 8786, 10.1021/bi00448a016
Sumegi, 1985, Interaction between citrate synthase and thiolase, J. Biol. Chem., 260, 188, 10.1016/S0021-9258(18)89713-7
Barnes, 1986, Organization of citric acid cycle enzymes into a multienzyme cluster, FEBS. Lett., 201, 267, 10.1016/0014-5793(86)80621-4
Robinson, 1987, Further characterization of the Krebs tricarboxylic acid cycle metabolon, J. Biol. Chem., 262, 1786, 10.1016/S0021-9258(19)75707-X
Sumegi, 1992, Regulatory consequences of organization of citric acid cycle enzymes, Curr. Top. Cell. Reg., 33, 249, 10.1016/B978-0-12-152833-1.50019-8
Srere, 1973, An immobilized three-enzyme system: a model for microenvironmental compartmentation in mitochondria, Proc. Natl. Acad. Sci., 70, 2534, 10.1073/pnas.70.9.2534
Koch-Schmidt, 1977, Studies on conformation of soluble and immobilized enzymes using differential scanning calorimetry. 2. Specific activity and thermal stability of enzymes bound weakly and strongly to Sepharose CL 4B, Biochemistry, 16, 2105, 10.1021/bi00629a009
Datta, 1985, Substrate channeling of oxalacetate in solid-state complexes of malate dehydrogenase and citrate synthase, J. Biol. Chem., 260, 15008, 10.1016/S0021-9258(18)95694-2
Bulow, 1991, Multienzyme systems obtained by gene fusion, Trends Biotechnol, 9, 226, 10.1016/0167-7799(91)90075-S
Bulow, 1987, Preparation of bifunctional enzyme complexes by fusion of two genes, Ann. NY. Aca. Sci., 501, 44, 10.1111/j.1749-6632.1987.tb45682.x
Westrop, 2006, Cysteine biosynthesis in Trichomonas vaginalis involves cysteine synthase utilizing O-phosphoserine, J. Biol. Chem., 281, 25062, 10.1074/jbc.M600688200