Virus adenovirus mới liên quan đến chim hải âu thường (Sterna hirundo)

Knowles DP (2017) Chapter 10—adenoviridae. In: MacLachlan NJ, Dubovi EJ (eds) Fenner’s veterinary virology, 5th edn. Academic Press, Boston, pp 217–227 Harrach B, Benkö M, Both GW, Brown M, Davison AJ, Echavarría M, Hess M, Kajon A, Lehmkuhl HD, Mautner V, Mittal SK, Wadell G (2012) Family—Adenoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy. Elsevier, San Diego, pp 125–141 Salzmann E, Muller E, Marschang RE (2021) Detection of Testadenoviruses and Atadenoviruses in Tortoises and Turtles in Europe. J Zoo Wildl Med 52:223–231 Doszpoly A, Wellehan JF Jr, Childress AL, Tarjan ZL, Kovacs ER, Harrach B, Benko M (2013) Partial characterization of a new adenovirus lineage discovered in testudinoid turtles. Infect Genet Evol 17:106–112 Kajan GL, Kecskemeti S, Harrach B, Benko M (2013) Molecular typing of fowl adenoviruses, isolated in Hungary recently, reveals high diversity. Vet Microbiol 167:357–363 Del Valle FP, Camba SI, Umali DV, Sasai K, Shirota K, Katoh H, Tajima T (2020) Research note: molecular and pathologic characterization of avian adenovirus isolated from the oviducts of laying hens in eastern Japan. Poult Sci 99:2459–2468 Mukai Y, Tomita Y, Kryukov K, Nakagawa S, Ozawa M, Matsui T, Tomonaga K, Imanishi T, Kawaoka Y, Watanabe T, Horie M (2019) Identification of a distinct lineage of aviadenovirus from crane feces. Virus Genes 55:815–824 Kumar R, Sturos M, Porter RE, Singh A, Armien AG, Goyal SM, Mor SK (2021) An outbreak of Fowl aviadenovirus A-associated gizzard erosion and ulceration in captive bobwhite quail (Colinus virginianus). Avian Dis 65:52–58 Marek A, Kajan GL, Kosiol C, Harrach B, Schlotterer C, Hess M (2014) Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus. Virology 462–463:107–114 Huang Y, Kang H, Dong J, Li L, Zhang J, Sun J, Zhang J, Sun M (2020) Isolation and partial genetic characterization of a new duck adenovirus in China. Vet Microbiol 247:108775 Zhang X, Zhong Y, Zhou Z, Liu Y, Zhang H, Chen F, Chen W, Xie Q (2016) Molecular characterization, phylogeny analysis and pathogenicity of a Muscovy duck adenovirus strain isolated in China in 2014. Virology 493:12–21 Teske L, Rubbenstroth D, Meixner M, Liere K, Bartels H, Rautenschlein S (2017) Identification of a novel aviadenovirus, designated pigeon adenovirus 2 in domestic pigeons (Columba livia). Virus Res 227:15–22 Kleine A, Hafez HM, Luschow D (2017) Investigations on aviadenoviruses isolated from turkey flocks in Germany. Avian Pathol 46:181–187 Marek A, Ballmann MZ, Kosiol C, Harrach B, Schlotterer C, Hess M (2014) Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus. J Gen Virol 95:156–170 Kajan GL, Davison AJ, Palya V, Harrach B, Benko M (2012) Genome sequence of a waterfowl aviadenovirus, goose adenovirus 4. J Gen Virol 93:2457–2465 Chen S, Cheng A, Wang M, Zhu D, Luo Q, Liu F, Chen X (2009) Detection and localization of a goose adenovirus in experimentally infected goslings, using indirect immunofluorescence with paraffin-embedded tissue sections. Avian Pathol 38:167–174 Oaks JL, Schrenzel M, Rideout B, Sandfort C (2005) Isolation and epidemiology of falcon adenovirus. J Clin Microbiol 43:3414–3420 Das S, Fearnside K, Sarker S, Forwood JK, Raidal SR (2017) A novel pathogenic aviadenovirus from red-bellied parrots (Poicephalus rufiventris) unveils deep recombination events among avian host lineages. Virology 502:188–197 Athukorala A, Forwood JK, Phalen DN, Sarker S (2020) Molecular characterisation of a novel and highly divergent passerine adenovirus 1. Viruses 12:1036 Gottdenker NL, Gregory CR, Ard MB, Lorenz WW, Nilsen RA, Ritchie BW (2019) Histopathologic changes, ultrastructure, and molecular characterization of an adenovirus in a sun conure (Aratinga solstitialis). Avian Dis 63:531–538 Marques MVR, Marin SY, Couto RM, Ecco R, Resende M, Martins N (2019) Fatal necrotic tracheitis by Aviadenovirus in captive Alagoas curassows (Pauxi mitu) extinct from the wild. Avian Pathol 48:278–283 Shah MS, Ashraf A, Khan MI, Rahman M, Habib M, Chughtai MI, Qureshi JA (2017) Fowl adenovirus: history, emergence, biology and development of a vaccine against hydropericardium syndrome. Arch Virol 162:1833–1843 Arnold JM, Oswald SA, Nisbet ICT, Pyle P, Patten MA (2020) Common Tern Sterna hirundo, version 1. In: Billerman M (ed) Birds of the world. Cornell Lab of Ornithology, Ithaca. https://doi.org/10.2173/bow.comter.01 Arnold JM, Tyerman DJ, Crump D, Williams KL, Oswald SA (2016) Premature feather loss among common tern chicks in Ontario: the return of an enigmatic developmental anomaly. PeerJ 4:1e1959 Arnold JM, Nisbet IC, Oswald SA (2016) Energetic constraint of non-monotonic mass change during offspring growth: a general hypothesis and application of a new tool. J Anim Ecol 85:476–486 Steel O, Kraberger S, Sikorski A, Young LM, Catchpole RJ, Stevens AJ, Ladley JJ, Coray DS, Stainton D, Dayaram A, Julian L, van Bysterveldt K, Varsani A (2016) Circular replication-associated protein encoding DNA viruses identified in the faecal matter of various animals in New Zealand. Infect Genet Evol 43:151–164 Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120 Nurk S, Meleshko D, Korobeynikov A, Pevzner PA (2017) metaSPAdes: a new versatile metagenomic assembler. Genome Res 27:824–834 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410 Bushnell B (2014) BBMap: a fast, accurate, splice-aware aligner. Lawrence Berkeley National Lab LBNL, Berkeley Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321 Darriba D, Taboada GL, Doallo R, Posada D (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164–1165 Harrach B, Tarjan ZL, Benko M (2019) Adenoviruses across the animal kingdom: a walk in the zoo. FEBS Lett 593:3660–3673 Doszpoly A, Harrach B, LaPatra S, Benko M (2019) Unconventional gene arrangement and content revealed by full genome analysis of the white sturgeon adenovirus, the single member of the genus Ichtadenovirus. Infect Genet Evol 75:103976 Stover BC, Muller KF (2010) TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics 11:7