Novel SNPs in the bovine ADIPOQ and PPARGC1A genes are associated with carcass traits in Hanwoo (Korean cattle)

Springer Science and Business Media LLC - Tập 40 Số 7 - Trang 4651-4660 - 2013
Sang-Beom Shin1, E. R. Chung1
1Division of Animal Science and Resources, College of Life Science and Natural Resources, Sangji University, 660 Usnadong, Wonju, Gangwondo, 220-702, South Korea

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Anderson L, Henderson C, Adachi Y (2001) Phosphorylation and rapid relocalization of 53BP1 to nuclear foci upon DNA damage. Mol Cell Biol 21:1719–1729

Barrett JC, Cardon LR (2006) Evaluating coverage of genome-wide association studies. Nat Genet 38:659–662

Berner HS, Lyngstadaas SP, Spahr A, Monjo M, Thommesen L, Drevon CA, Syversen U, Reseland JE (2004) Adiponectin and its receptors are expressed in bone-forming cells. Bone 35:842–849

Cai L, Taylor J, Smyth K, Findeisen B, Lehn C, Davis S, Davis S (2004) Quantitative trait loci and somatostatin. US Patent Application no 20040018511

Casas E, Shackelford SD, Keele JW, Stone RT, Kappes SM, Koohmaraie M (2000) Quantitative trait loci affection growth and carcass composition of cattle segregating alternate forms of myostatin. J Anim Sci 78:560–569

Casas E, Shackelford SD, Keele JW, Koohmaraie M, Smith TPL, Stone RT (2003) Detection of quantitative trait loci for growth and carcass composition in cattle. J Anim Sci 81:2976–2983

Dai MH, Xia T, Zhang GD, Chen XD, Gan L, Feng SQ, Qiu H, Peng Y, Yang ZQ (2006) Cloning, expression and chromosome localization of porcine adiponectin and adiponectin receptors genes. Domest Anim Endocrin 30:117–125

Dall’Olio S, Roberta D, Buttazzoni L, Zambonelli P, Vincenzo R (2009) Study of porcine adiponectin (ADIPOQ) gene and association of a missense mutation with EBVs for production and carcass traits in Italian Duroc heavy pigs. Livest Sci 125:101–104

Davis GP, Hetzel DJS, Corbet NJ, Scacheri S, Lowden S, Renaud J, Mayne C, Stevenson R, Moore SS, Byrne K (1998) The mapping of quantitative trait loci for birth weight in a tropical beef herd. Proceedings of the 6th world congress on genetics applied to livestock production. Armidale, vol. 26, p 441–444

Dekkers JC (2004) Commercial application of marker- and gene assisted selection in livestock: strategies and lessons. J Anim Sci 82(E-Suppl):E313–E328

Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics, 4th edn. Longman scientific and technical, New York

Freyer G, Sørensen P, Kühn C, Weikard R, Hoeschele I (2003) Search for pleiotropic QTL on chromosome BTA6 affecting yield traits of milk production. J Dairy Sci 86:999–1008

Gao J, Pfeifer D, He LJ, Qiao F, Zhang Z, Arbman G, Wang ZL, Jia CR, Carstensen J, Sun XF (2007) Association of NFKBIA polymorphism with colorectal cancer risk and prognosis in Swedish and Chinese populations. Scand J Gastroenterol 42:345–350

Georges M, Nielsen D, Mackinnon M, Mishra A, Okimoto R, Pasquino AT, Sargeant LS, Sorensen A, Steele MR, Zhao X, Womack JE, Hoeschele I (1995) Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 139:907–920

Grisart B, Coppieters W, Farnir F, Karim L, Ford C, Cambisano N, Mni M, Reid S, Spelman R, Georges M, Snell R (2002) Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res 12:222–231

Houde AA, Murphy BD, Mathieu O, Bordignon V, Palin MF (2008) Characterization of swine adiponectin and adiponectin receptor polymorphisms and their association with reproductive traits. Anim Genet 39:249–257

Kadowaki T, Yamauchi T (2005) Adiponectin and adiponectin receptors. Endocr Rev 26:439–451

Kayan A, Cinar MU, Uddin MJ, Phatsara C, Wimmers K, Ponsuksili S, Tesfaye D, Looft C, Juengst H, Tholen E, Schellander K (2011) Polymorphism and expression of the porcine tenascin C gene associated with meat and carcass quality. Meat Sci 89:76–83

Khatib H, Zaitoun I, Wiebelhaus-Finger J, Chang YM, Rosa GJ (2007) The association of bovine PPARGC1A and OPN genes with milk composition in two independent Holstein cattle populations. J Dairy Sci 90:2966–2970

Kim JJ, Farnir F, Savell J, Taylor JF (2003) Detection of quantitative trait loci for growth and beef carcass fatness traits in a cross between Bos taurus (Angus) and Bos indicus (Brahman) cattle. J Anim Sci 81:1933–1942

Kim JB, Kim DJ, Lee JK, Lee CY (2010) Genetic relationship between carcass traits and carcass price of Korean cattle. Asian-Aust J Anim Sci 7:848–854

Kim JJ, Li Y, Lee JH, Lee YM (2011) Application of likage disequilibrium mapping methods to detect QTL for carcass quality on chromosome 6 using a high density SNP map in Hanwoo. Asian-Aust J Anim Sci 24:457–462

Kneeland J, Li C, Basarab J, Snelling WM, Benkel B, Murdoch B, Hansen C, Moore SS (2004) Identification and fine mapping of quantitative trait loci for growth traits on bovine chromosomes 2, 6, 14, 19, 21, and 23 within one commercial line of Bos taurus. J Anim Sci 82:3405–3414

Komisarek J, Dorynek Z (2009) Effect of ABCG2, PPARGC1A, OLR1 and SCD1 gene polymorphism on estimated breeding values for functional and production traits in Polish Holstein-Friesian bulls. J Appl Genet 50:125–132

Kühn C, Freyer G, Weikard R, Goldammer T, Schwerin M (1999) Detection of QTL for milk production traits in cattle by application of a specifically developed marker map of BTA6. Anim Genet 30:333–340

Kunej T, Wu XL, Berlic TM, Michal JJ, Jiang Z, Dovc P (2005) Frequency distribution of a Cys430Ser polymorphism in peroxisome proliferator-activated receptor-gamma coactivator-1 (PPARGC1) gene sequence in Chinese and Western pig breeds. J Anim Breed Genet 122:7–11

Li SH, Xiong YZ, Zheng R, Li AY, Deng CY, Jiang SW, Lei MG, Wen YQ, Cao GC (2002) Polymorphism of porcine myostatin gene. Yi Chuan Xue Bao 29:326–331

Li C, Basarab J, Snelling WM, Benkel B, Kneeland J, Murdoch B, Hansen C, Moore SS (2004) Identification and fine mapping of quantitative trait loci for backfat on bovine chromosomes 2, 5, 6, 19, 21, and 23 in a commercial line of Bos taurus. J Anim Sci 82:967–972

Lord E, Ledoux S, Murphy BD, Beaudry D, Palin MF (2005) Expression of adiponectin and its receptors in swine. J Anim Sci 83:565–578

Maddineni S, Metzger S, Ocón O, Hendricks G 3rd, Ramachandran R (2005) Adiponectin gene is expressed in multiple tissues in the chicken: Food deprivation influences adiponectin messenger ribonucleic acid expression. Endocrinology 146:4250–4256

Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cell. Nucleic Acids Res 16:12–15

Morsci NS, Sellner EM, Schnabel RD, Taylor JF (2006) Association analysis of adiponectin and somatostatin polymorphisms on BTA1 with growth and carcass traits in Angus cattle. Anim Genet 37:554–562

Nakaya HI, Amaral PP, Louro R, Lopes A, Fachel AA, Moreira YB, El-Jundi TA, da Silva AM, Reis EM, Verjovski-Almeida S (2007) Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biol 8:R43

Oshima K, Nampei A, Matsuda M, Iwaki M, Fukuhara A, Hashimoto J, Yoshikawa H, Shimomura I (2005) Adiponectin increases bone mass by suppressing osteoclast and activating osteoblast. Biochem Biophys Res Commun 331:520–526

Rosen ED, Spiegelman BM (2000) Molecular regulation of adipogenesis. Annu Rev Cell Dev Biol 16:145–171

Schennink A, Bovenhuis H, Le′on-Kloosterziel KM, van Arendonk JAM, Visker MHPW (2009) Effect of polymorphisms in the FASN, OLR1, PPARGC1A, PRL and STAT5A genes on bovine milk-fat composition. Anim Genet 40:909–916

Shin SC, Heo JP, Yeo JS, Lee CY, Chung ER (2011) Genetic association of phosphodiesterase 1B (PDE1B) with carcass traits in Korean cattle. Mol Biol Rep 39:4869–4874

Soria LA, Corva PM, Branda Sica A, Villarreal EL, Melucci LM, Mezzadra CA, Papaleo Mazzucco J, Ferna′ndez Macedo G, Silvestro C, Schor A, Miquel MC (2009) Association of a novel polymorphism in the bovine PPARGC1A gene with growth, slaughter and meat quality traits in Brangus steers. Mol Cell Probes 23:304–308

Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978–989

Stone RT, Deele JW, Shackelford SD, Kappes SM, Koohmaraie M (1999) A primary screen of the bovine genome for quantitative trait loci affecting carcass and growth traits. J Anim Sci 77:1379–1384

Thaller G, Kramer W, Winter A, Kaupe B, Erhaedt G, Fries R (2003) Effect of DGAT1 variants on milk production traits in German cattle breeds. J Anim Sci 81:1911–1918

Van Laere AS, Nguyen M, Braunschweig M, Nezer C, Collette C, Moreau L, Archibald AL, Haley CS, Buys N, Tally M, Andersson G, Georges MAndersson L (2003) A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Nature 425:832–836

Weikard R, Kühn C, Goldammer T, Freyer G, Schwerin M (2005) The bovine PPARGC1A gene: molecular characterization and association of an SNP with variation of milk fat synthesis. Physiol Genomics 21:1–13

White SN, Casas E, Allan MF, Keele JW, Snelling WM, Wheeler TL, Shackelford SD, Koohmaraie M, Smith TPL (2007) Evaluation in beef cattle of six deoxyribonucleic acid markers developed for dairy traits reveals an osteopontin polymorphism associated with postweaning growth. J Anim Sci 85:1–10

Wiener P, Maclean I, Williams JL, Woolliams JA (2000) Testing for the presence of previously identified QTL for milk production traits in new populations. Anim Genet 31:385–395

Yao MC (1996) Programmed DNA deletions in Tetrahymena: mechanisms and implications. Trends Genet 12:26–30

Zhang Q, Boichard D, Hoeschele I, Ernst C, Eggen A, Murkve B, Pfister-Genskow M, Witte LA, Grignola FE, Uimari P, Thaller G, Bishop MD (1998) Mapping quantitative trait loci for milk production and health of dairy cattle in a large outbred pedigree. Genetics 149:1959–1973

Zhang L, Chen H, Lan X, Zhang C, Zhang L, Zhang A, Zhang Q, Lei C, Zhang H (2009) The navel 5 bp deletion polymorphism in the promotor region of bovine ACRP30 gene. Mol Biol Rep 36:895–899