Non-molecular identification of nontuberculous mycobacteria in the clinical microbiology laboratory: What's the real deal?

DSMZ Tortoli, 2004, Clinical features of infections caused by new nontuberculous mycobacteria, part I, Clin. Microbiol. Newsl., 26, 89, 10.1016/j.clinmicnews.2004.06.001 Tortoli, 2004, Clinical features of infections caused by new nontuberculous mycobacteria, part II, Clin. Microbiol. Newsl., 26, 97, 10.1016/j.clinmicnews.2004.06.002 Debrunner, 1992, Epidemiology and clinical significance of nontuberculous mycobacteria in patients negative for human immunodeficiency virus in Switzerland, Clin. Infect. Dis., 15, 330, 10.1093/clinids/15.2.330 Runyon, 1959, Anonymous mycobacteria in pulmonary disease, Med. Clin. N. Am., 43, 273, 10.1016/S0025-7125(16)34193-1 Vestal, 1973 Runyon, 1970, Identification of mycobacterial pathogens utilizing colony characteristics, Am. J. Clin. Pathol., 54, 578, 10.1093/ajcp/54.4.578 Welch, 1993, Timely culture for mycobacteria which utilizes a microcolony method, J. Clin. Microbiol., 31, 2178, 10.1128/JCM.31.8.2178-2184.1993 Vincent, 2003, Mycobacterium: phenotypic and genotypic identification, 560 Tortoli, 2003, Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s, Clin. Microbiol. Rev., 16, 319, 10.1128/CMR.16.2.319-354.2003 Herdman, 2004, The new mycobacterial species — emerging or newly distinguished pathogens, Clin. Lab. Med., 24, 651, 10.1016/j.cll.2004.05.011 Witebsky, 1996, Identification of mycobacteria by conventional methods, Clin. Lab. Med., 16, 569, 10.1016/S0272-2712(18)30256-7 Mondragon-Barreto, 2000, Comparison among three methods for mycobacterial identification, Salud Publica Mex., 42, 484, 10.1590/S0036-36342000000600003 Cook, 2003, Conventional methods versus 16S ribosomal DNA sequencing for identification of nontuberculous mycobacteria: cost analysis, J. Clin. Microbiol., 41, 1010, 10.1128/JCM.41.3.1010-1015.2003 Butler, 2001, Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species, Clin. Microbiol. Rev., 14, 704, 10.1128/CMR.14.4.704-726.2001 Butler, 1996 Thibert, 1993, Routine application of high-performance liquid chromatography for identification of mycobacteria, J. Clin. Microbiol., 31, 1759, 10.1128/JCM.31.7.1759-1763.1993 Glickman, 1994, Rapid identification of mycolic acid patterns of mycobacteria by high-performance liquid chromatography using pattern recognition software and a Mycobacterium library, J. Clin. Microbiol., 32, 740, 10.1128/JCM.32.3.740-745.1994 Kellogg, 2001, Application of the Sherlock Mycobacteria Identification System using high-performance liquid chromatography in a clinical laboratory, J. Clin. Microbiol., 39, 964, 10.1128/JCM.39.3.964-970.2001 Woods, 2002, The mycobacteriology laboratory and new diagnostic techniques, Infect. Dis. Clin. N. Am., 16, 127, 10.1016/S0891-5520(03)00049-7 Cloud, 2002, Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries, J. Clin. Microbiol., 40, 400, 10.1128/JCM.40.2.400-406.2002 Hall, 2003, Evaluation of the MicroSeq System for identification of mycobacteria by 16S ribosomal DNA sequencing and its integration into a routine clinical mycobacteriology laboratory, J. Clin. Microbiol., 41, 1447, 10.1128/JCM.41.4.1447-1453.2003 Runyon, 1965, Typical mycobacteria: their classification, Am. Rev. Respir. Dis., 91, 288