Những hiểu biết mới về sự đa dạng di truyền của zooxanthellae trong các loài động vật thân mềm ở Địa Trung Hải

Baillie BK, Belda-Baillie CA, Maruyama T (2000) Conspecificity and Indo-Pacific distribution of Symbiodinium genotypes (Dinophyceae) from giant clams. J Phycol 36:1153–1161 Baker AC, Rowan R, Knowlton N (1997) Symbiosis ecology of two Caribbean Acroporid corals. In: Lessios HA, Macintyre IG (eds) Proceedings 8th international coral reef symposium, Vol. 2. Smithsonian Tropical Research Institute, Balboa, Panama, pp 1295–1300 Baker AC, Rowan R (1997) Diversity of symbiotic dinoflagellates (zooxanthellae) in scleractinian corals of the Caribbean and eastern pacific. In: Lessios HA, Macintyre IG (eds) Proceedings 8th international coral reef symposium, Vol. 2. Smithsonian Tropical Research Institute, Balboa, Panama, pp 1301–1306 Baker AC (1999) The symbiosis ecology of reef-building corals. Ph.D. dissertation. University of Miami, Miami, FL, 120 pp Baker AC (2003) Flexibility and specificity in coral-algal symbiosis: diversity, ecology and biogeography of Symbiodinium. Annu Rev Ecol Evol Syst 34:661–689 Barbrook AC, Visram S, Douglas AE, Christopher JH (2006) Molecular diversity of dinoflagellate symbionts of Cnidaria: the psbA minicircle of Symbiodinium. Protist 157:159–171 Boudouresque CF (2004) Marine biodiversity in the Mediterranean: status of species, populations and communities. Scientific Reports Port-Cross Natural Park 20:97–146 Coll M, Piroddi C, Steenbeek J, Kaschner K, Lasram FBR, Aguzzi J, Ballesteros E, Bianchi CN, Cobera J, Dailianis T et al (2010) The biodiversity of the Mediterranean Sea: estimates, patterns, and threats. PLoS One 5:e11842 Coffroth MA, Lasker HR, Diamond ME, Bruenn JA, Birmingham E (1992) DNA fingerprints of a gorgonian coral: a method for detecting clonal structure in a vegetative species. Mar Biol 114:317–325 Coffroth MA, Santos SR (2005) Genetic diversity of symbiotic dinoflagellates in the genus Symbiodinium. Protist 156:19–34 Dimond J, Carrington E (2007) Temporal variation in the symbiosis and growth of the temperate scleractinian coral Astrangia poculata. Mar Ecol Prog Ser 348:161–172 Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–791 Finney JC, Pettay DT, Sampayo EM, Warner ME, Oxendorf HA, LaJeunesse TC (2010) The relative significance of host-habitat, depth, and geography on the ecology, endemism, and peciation of coral endosymbionts in the genus Symbiodinium. Microb Ecol 60:250–263 Forcioli D, Merle P-L, Caligara C, Ciosi M, Muti C, Francour P, Cerrano C, Allemand D (2011) Symbiont diversity is not involved in depth acclimation in the Mediterranean sea whip Eunicella singularis. Mar Ecol Prog Ser 439:57–71 Furla P, Allemand D, Shick JM, Ferrier- Pagès C, Richier S, Plantivaux A, Merle PL, Tambutté (2005) The symbiotic anthozoan: a physiological chimera between algal and animal. Integr Comp Biol 45:595–604 Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221–224 Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 5:696–704 Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755 LaJeunesse TC (2001) Investigating the biodiversity, ecology and phylogeny of endosymbiotic dinoflagellates in the genus Symbiodinium using the ITS region: in search of a “species” level marker. J Phycol 37:866–880 LaJeunesse TC, Loh WKW, vanWoesik R, Hoegh-Guldberg O, Schmidt GW, Fitt WK (2003) Low symbiont diversity in southern great barrier reef corals relative to those of the Caribbean. Limnol Oceanogr 48:2046–2054 LaJeunesse TC, Thornhill DJ, Cox EF, Stnton FG, Fitt wK, Schmidt W (2004) High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii. Coral Reefs 23:596–603 LaJeunesse TC, Pettay T, Sampayo EM, Phongsuwan N, Brown B, Obura D, Hoegh-Guldberg O, Fitt WK (2010) Special Paper: Long-standing environmental conditions, geographic isolation and host–symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium. J Biogeogr 37:785–800 LaJeunesse TC, Parkinson J, Reimer JD (2012) A genetic-based description of Symbiodinium minutum sp. nov. and S. psygmophilum sp. nov. (Dinophyceae), two dinoflagellates symbiotic with cnidarian. J Phycol 48:1380–1391 Loh WKW, Carter D, Hoegh-Guldberg O (1998) Diversity of zooxanthellae from scleractinian corals of One tree island (The great barrier reef). In: Greenwood JG, Hall NJ (eds) Proceedings of the Australian coral reef society, 75th annual conference. University of Queensland, Brisbane, pp 141–150 Loh WKW, Loi T, Carter D, Hoegh-Guldberg O (2001) Genetic variability of the symbiotic dinoflagellates from the wide ranging coral species Seriatopora hystrix and Acropora longicyathus in the Indo-West Pacific. Mar Ecol Prog Ser 222:97–107 Meron D, Rodolfo-Metalpa R, Cunning R, Baker AC, Fine M, Banin E (2012) Changes in microbial communities in response to a natural pH gradient. ISME J 6:1775–1785 Pochon X, Putnam HM, Gates RD (2014) Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis and evolution. Peerj, e394. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818 Rodriguez-Lanetty M, Loh W, Carter D, Hoegh-Gulberg O (2001) Latitudinal variability in symbiont specificity within the widespread scleractinian coral Plesiastrea versipora. Mar Biol 138:1175–1181 Rodriguez-Lanetty M (2003) Evolving lineages of Symbiodinium-like dinoflagellates based on ITS1 rDNA. Mol Phylogenet Evol 28:152–168 Rodriguez-Lanetty M, Hoegh-Guldberg O (2003) Symbiont diversity within the widespread scleractinian coral Plesiastrea versipora, across the northwestern Pacific. Mar Biol 143:501–509 Sampayo AM, Dove S, LaJeunesse (2009) Cohesive molecular genetic data delineate species diversity in the dinoflagellate genus Symbiodinium. Mol Ecol 18:500–519 Santos SR, Taylor DJ, Coffroth MA (2001) Genetic comparisons of freshly isolated vs. cultured symbiotic dinoflagellates: Implications for extrapolating to the intact symbiosis. J Phycol 37:866–880 Santos SR, Taylor DJ, Kinzie RA, Hidaka M, Sakai K, Coffroth AM (2002) Molecular phylogeny of symbiotic dinoflagellates inferred from partial chloroplast large subunit (23S)-rDNA sequences. Mol Phylogenet Evol 23:97–11 Savage AM, Goodson MS, Visram S, Trapido-Rosenthal H, Wiedenmann J, Douglas AE (2002) Molecular diversity of symbiotic algae at the latitudinal margins of their distribution: dinoflagellates of the genus Symbiodinium in corals and sea anemones. Mar Ecol Prog Ser 244:17–26 Templado J (2014) Future trends of Mediterranean biodiversity. In: Goffredo S, Dubinsky Z (eds) The Mediterranean Sea: Its history and present challenges, Chapter: 28. Springer, New York Thornhill DJ, Kemp DW, Bruns BU, Fitt WK, Schmidt GW (2008) Correspondence between cold tolerance and temperate biogeography in a western Atlantic Symbiodinium (Dinophyta) lineage. J Phycol 44:1126–1135 Thornhill DJ, Yiang X, Pettay DT, Zhong SSR (2013) Population genetic dataof a model symbiotic cnidarian system reveal remarkable symbiotic specificity and vectored introductions across ocean basins. Mol Ecol 2:4499–4515 Trench RK (1993) Microalgal-invertebrate symbioses- a review. Endocytobiosis and Cell Res 9:135–175 Visram S, Wiedenmann J, Douglas AE (2006) Molecular diversity of symbiotic algae of the genus Symbiodinium (Zooxanthellae) in cnidarians of the Mediterranean Sea. J Mar Biol Assoc UK 86:1281–1283 Weis VM, Reynolds WS, deBoer MD, Krupp DA (2001) Host-symbiont specificity during onset of symbiosis between the dinoflagellates Symbiodinium spp. and planula larvae of the scleractinian coral Fungia scutaria. Coral Reefs 20:301–308