Near-optimal probabilistic RNA-seq quantification

Nature Biotechnology - Tập 34 Số 5 - Trang 525-527 - 2016
Nicolas Bray1, Harold Pimentel2, Páll Melsted3, Lior Pachter2
1Innovative Genomics Initiative, University of California, Berkeley, California, USA.,
2Department of Computer Science, University of California, Berkeley, California, USA
3Faculty of Industrial Engineering, Mechanical Engineering and Computer Science, University of Iceland, Reykjavik, Iceland

Tóm tắt

Từ khóa


Tài liệu tham khảo

Kim, D. et al. Genome Biol. 14, R36 (2013).

Trapnell, C. et al. Nat. Biotechnol. 28, 511–515 (2010).

Roberts, A. & Pachter, L. Nat. Methods 10, 71–73 (2013).

Anders, S., Pyl, P.T. & Huber, W. Bioinformatics 31, 166–169 (2015).

Patro, R., Mount, S.M. & Kingsford, C. Nat. Biotechnol. 32, 462–464 (2014).

Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. & Wold, B. Nat. Methods 5, 621–628 (2008).

Nicolae, M., Mangul, S., Măndoiu, I. & Zelikovsky, A. in Algorithms in Bioinformatics (eds. Moulton, V. & Singh, M.) 202–214 (Springer, 2010).

Compeau, P.E.C., Pevzner, P.A. & Tesler, G. Nat. Biotechnol. 29, 987–991 (2011).

Li, B. & Dewey, C.N. BMC Bioinformatics 12, 323 (2011).

SEQC/MAQC-III Consortium. Nat. Biotechnol. 32, 903–914 (2014).

Lappalainen, T. et al. Nature 501, 506–511 (2013).

Roberts, A., Trapnell, C., Donaghey, J., Rinn, J.L. & Pachter, L. Genome Biol. 12, R22 (2011).

Marioni, J.C., Mason, C.E., Mane, S.M., Stephens, M. & Gilad, Y. Genome Res. 18, 1509–1517 (2008).

Wold, B. & Myers, R.M. Nat. Methods 5, 19–21 (2008).

Iqbal, Z., Caccamo, M., Turner, I., Flicek, P. & McVean, G. Nat. Genet. 44, 226–232 (2012).

Lee, S., Seo, C.H., Alver, B.H., Lee, S. & Park, P.J. BMC Bioinformatics 16, 278 (2015).

Köster, J. & Rahmann, S. Bioinformatics 28, 2520–2522 (2012).