Nanobiochips

Craighead H (2006) Future lab-on-a-chip technologies for interrogating individual molecules. Nature 442(7101):387–393

Patolsky F, Zheng G, Lieber CM (2006) Nanowire sensors for medicine and the life sciences. Nanomedicine 1(1):51–65

Israelachvili JN (1985) Intermolecular and surface forces. Academic Press, London

Nel AE, Madler L, Velegol D, Xia T, Hoek EMV, Somasundaran P, Klaessig F, Castranova V, Thompson M (2009) Understanding biophysicochemical interactions at the nano-bio interface. Nat Mater 8(7):543–557

Jonkheijm P, Weinrich D, Schröder H, Niemeyer CM, Waldmann H (2008) Chemical strategies for generating protein biochips. Angewandte Chemie Int Edition 47(50):9618–9647

Wong LS, Khan F, Micklefield J (2009) Selective covalent protein immobilization: strategies and applications. Chem Rev 109(9):4025–4053

Nebhani L, Barner-Kowollik C (2009) Orthogonal transformations on solid substrates: efficient avenues to surface modification. Adv Mater 21(34):3442–3468

Love JC, Estroff LA, Kriebel JK, Nuzzo RG, Whitesides GM (2005) Self-assembled monolayers of thiolates on metals as a form of nanotechnology. Chem Rev 105(4):1103–1169

Vericat C, Vela ME, Benitez G, Carro P, Salvarezza RC Self-assembled monolayers of thiols and dithiols on gold: new challenges for a well-known system. Chem Soc Rev 39 (5):1805–1834

Smith RK, Reed SM, Lewis PA, Monnell JD, Clegg RS, Kelly KF, Bumm LA, Hutchison JE, Weiss PS (2001) Phase separation within a binary self-assembled monolayer on Au{111} driven by an amide-containing alkanethiol. J Phys Chem B 105(6):1119–1122

North SH, Lock EH, King TR, Franek JB, Walton SG, Taitt CR (2009) Effect of physicochemical anomalies of soda-lime silicate slides on biomolecule immobilization. Anal Chem 82(1):406–412

Hucknall A, Rangarajan S, Chilkoti A (2009) In pursuit of zero: polymer brushes that resist the adsorption of proteins. Adv Mater 21(23):2441–2446

Kenausis GL, Vörös J, Elbert DL, Huang N, Hofer R, Ruiz-Taylor L, Textor M, Hubbell JA, Spencer ND (2000) Poly(l-lysine)-g-poly(ethylene glycol) layers on metal oxide surfaces: attachment mechanism and effects of polymer architecture on resistance to protein adsorption. J Phys Chem B 104(14):3298–3309

Barbey R, Lavanant L, Paripovic D, Schuwer N, Sugnaux C, Tugulu S, Klok HA (2009) Polymer brushes via surface-initiated controlled radical polymerization: synthesis, characterization, properties, and applications. Chem Rev 109(11):5437–5527

Andersson O, Larsson A, Ekblad T, Liedberg B (2009) Gradient hydrogel matrix for microarray and biosensor applications: an imaging SPR study. Biomacromolecules 10(1):142–148

Rakickas T, Ericsson EM, Ruželė Ž, Liedberg B, Valiokas R (2011) Functional hydrogel density patterns fabricated by dip-pen nanolithography and photografting. Small 7 (15):2153–2157

Robinson CV, Sali A, Baumeister W (2007) The molecular sociology of the cell. Nature 450(7172):973–982

Sackmann E (1996) Supported membranes: scientific and practical applications. Science 271(5245):43–48

Czolkos I, Jesorka A, Orwar O (2011) Molecular phospholipid films on solid supports. Soft Matter 7(10):4562–4576

Tanaka M, Sackmann E (2005) Polymer-supported membranes as models of the cell surface. Nature 437(7059):656–663

Karlsson A, Karlsson R, Karlsson M, Cans A-S, Stromberg A, Ryttsen F, Orwar O (2001) Molecular engineering: networks of nanotubes and containers. Nature 409(6817):150–152

Jesorka A, Stepanyants N, Zhang HJ, Ortmen B, Hakonen B, Orwar O (2011) Generation of phospholipid vesicle-nanotube networks and transport of molecules therein. Nat Protoc 6 (6):791–805

Beulen MWJ, Bügler J, Lammerink B, Geurts FAJ, Biemond EMEF, van Leerdam KGC, van Veggel FCJM, Engbersen JFJ, Reinhoudt DN (1998) Self-assembled monolayers of heptapodant β-cyclodextrins on gold. Langmuir 14(22):6424–6429

Auletta T, Dordi B, Mulder A, Sartori A, Onclin S, Bruinink CM, Peter M, Nijhuis CA, Beijleveld H, Schonherr H, Vancso GJ, Casnati A, Ungaro R, Ravoo BJ, Huskens J, Reinhoudt DN (2004) Writing patterns of molecules on molecular printboards. Angew Chem Int Ed Engl 43(3):369–373

Huskens J (2006) Multivalent interactions at interfaces. Curr Opin Chem Biol 10(6):537–543

Tinazli A, Tang JL, Valiokas R, Picuric S, Lata S, Piehler J, Liedberg B, Tampé R (2005) High-affinity chelator thiols for switchable and oriented immobilization of histidine-tagged proteins: a generic platform for protein chip technologies. Chem-Eur J 11(18):5249–5259

Grunwald C, Schulze K, Reichel A, Weiss VU, Blaas D, Piehler J, Wiesmuller K-H, Tampé R In situ assembly of macromolecular complexes triggered by light. Proc Natl Acad Sci 107 (14):6146–6151

Bhagawati M, Lata S, Tampé R, Piehler J (2010) Native laser lithography of his-tagged proteins by uncaging of multivalent chelators. J Am Chem Soc 132 (17):5932–5933

Geyer W, Stadler V, Eck W, Zharnikov M, Golzhauser A, Grunze M (1999) Electron-induced crosslinking of aromatic self-assembled monolayers: negative resists for nanolithography. Appl Phys Lett 75(16):2401–2403

Eck W, Stadler V, Geyer W, Zharnikov M, Gölzhäuser A, Grunze M (2000) Generation of surface amino groups on aromatic self-assembled monolayers by low energy electron beams—a first step towards chemical lithography. Adv Mater 12(11):805–808

Ballav N, Schilp S, Zharnikov M (2008) Electron-beam chemical lithography with aliphatic self-assembled monolayers. Angewandte Chemie Int Edition 47(8):1421–1424

Turchanin A, Tinazli A, El-Desawy M, Großmann H, Schnietz M, Solak HH, Tampé R, Gölzhäuser A (2008) Molecular self-assembly, chemical lithography, and biochemical tweezers: a path for the fabrication of functional nanometer-scale protein arrays. Adv Mater 20(3):471–477

Rundqvist J, Mendoza B, Werbin JL, Heinz WF, Lemmon C, Romer LH, Haviland DB, Hoh JH (2006) High fidelity functional patterns of an extracellular matrix protein by electron beam-based inactivation. J Am Chem Soc 129(1):59–67

Christman KL, Schopf E, Broyer RM, Li RC, Chen Y, Maynard HD (2008) Positioning multiple proteins at the nanoscale with electron beam cross-linked functional polymers. J Am Chem Soc 131(2):521–527

Yee CK, Amweg ML, Parikh AN (2004) Direct photochemical patterning and refunctionalization of supported phospholipid bilayers. J Am Chem Soc 126(43):13962–13972

Yee CK, Amweg ML, Parikh AN (2004) Membrane photolithography: direct micropatterning and manipulation of fluid phospholipid membranes in the aqueous phase using deep-UV light. Adv Mater 16(14):1184–1189

Lohmüller T, Aydin D, Schwieder M, Morhard C, Louban I, Pacholski C, Spatz JP (2011) Nanopatterning by block copolymer micelle nanolithography and bioinspired applications. Biointerphases 6(1). doi: 10.1116/1.3536839

Gates BD, Xu QB, Stewart M, Ryan D, Willson CG, Whitesides GM (2005) New approaches to nanofabrication: molding, printing, and other techniques. Chem Rev 105(4):1171–1196

Qin D, Xia Y, Whitesides GM Soft lithography for micro- and nanoscale patterning. Nat Protoc 5(3):491–502

Schmid H, Michel B (2000) Siloxane polymers for high-resolution, high-accuracy soft lithography. Macromolecules 33(8):3042–3049

Odom TW, Love JC, Wolfe DB, Paul KE, Whitesides GM (2002) Improved pattern transfer in soft lithography using composite stamps. Langmuir 18(13):5314–5320

Rolland JP, Hagberg EC, Denison GM, Carter KR, De Simone JM (2004) High-resolution soft lithography: enabling materials for nanotechnologies. Angewandte Chemie Int Edition 43(43):5796–5799

Li HW, Muir BVO, Fichet G, Huck WTS (2003) Nanocontact printing: a route to sub-50-nm-scale chemical and biological patterning. Langmuir 19(6):1963–1965

Renaultt JP, Bernard A, Bietsch A, Michel B, Bosshard HR, Delamarche E, Kreiter M, Hecht B, Wild UP (2003) Fabricating arrays of single protein molecules on glass using microcontact printing. J Phys Chem B 107(3):703–711

Stamou D, Duschl C, Delamarche E, Vogel H (2003) Self-assembled microarrays of attoliter molecular vessels. Angew Chem Int Ed Engl 42(45):5580–5583

Kraus T, Malaquin L, Schmid H, Riess W, Spencer ND, Wolf H (2007) Nanoparticle printing with single-particle resolution. Nat Nano 2(9):570–576

Cheng W, Park N, Walter MT, Hartman MR, Luo D (2008) Nanopatterning self-assembled nanoparticle superlattices by moulding microdroplets. Nat Nano 3(11):682–690

Xu S, Liu GY (1997) Nanometer-scale fabrication by simultaneous nanoshaving and molecular self-assembly. Langmuir 13(2):127–129

Wadu-Mesthrige K, Xu S, Amro NA, Liu GY (1999) Fabrication and imaging of nanometer-sized protein patterns. Langmuir 15(25):8580–8583

Wadu-Mesthrige K, Amro NA, Garno JC, Xu S, Liu GY (2001) Fabrication of nanometer-sized protein patterns using atomic force microscopy and selective immobilization. Biophys J 80(4):1891–1899

Tinazli A, Piehler J, Beuttler M, Guckenberger R, Tampé R (2007) Native protein nanolithography that can write, read and erase. Nat Nanotechnol 2(4):220–225

Piner RD, Zhu J, Xu F, Hong SH, Mirkin CA (1999) “Dip-pen” nanolithography. Science 283(5402):661–663

Salaita K, Wang YH, Mirkin CA (2007) Applications of dip-pen nanolithography. Nat Nanotechnol 2(3):145–155

Lee KB, Park SJ, Mirkin CA, Smith JC, Mrksich M (2002) Protein nanoarrays generated by dip-pen nanolithography. Science 295(5560):1702–1705

Lee SW, Oh BK, Sanedrin RG, Salaita K, Fujigaya T, Mirkin CA (2006) Biologically active protein nanoarrays generated using parallel dip-pen nanolithography. Adv Mater 18 (9):1133–1136

Valiokas R, Vaitekonis A, Klenkar G, Trinkunas G, Liedberg B (2006) Selective recruitment of membrane protein complexes onto gold substrates patterned by dip-pen nanolithography. Langmuir 22(8):3456–3460

Vega RA, Maspoch D, Salaita K, Mirkin CA (2005) Nanoarrays of single virus particles. Angewandte Chemie Int Edition 44(37):6013–6015

Smith JC, Lee KB, Wang Q, Finn MG, Johnson JE, Mrksich M, Mirkin CA (2003) Nanopatterning the chemospecific immobilization of cowpea mosaic virus capsid. Nano Lett 3(7):883–886

Demers LM, Ginger DS, Park SJ, Li Z, Chung SW, Mirkin CA (2002) Direct patterning of modified oligonucleotides on metals and insulators by dip-pen nanolithography. Science 296(5574):1836–1838

Lenhert S, Sun P, Wang Y, Fuchs H, Mirkin CA (2007) Massively parallel dip-pen nanolithography of heterogeneous supported phospholipid multilayer patterns. Small 3(1):71–75

Lee KB, Lim JH, Mirkin CA (2003) Protein nanostructures formed via direct-write dip-pen nanolithography. J Am Chem Soc 125(19):5588–5589

Lim JH, Ginger DS, Lee KB, Heo J, Nam JM, Mirkin CA (2003) Direct-write dip-pen nanolithography of proteins on modified silicon oxide surfaces. Angew Chem Int Ed Engl 42(20):2309–2312

Wilson DL, Martin R, Hong S, Cronin-Golomb M, Mirkin CA, Kaplan DL (2001) Surface organization and nanopatterning of collagen by dip-pen nanolithography. Proc Natl Acad Sci USA 98(24):13660–13664

Nam JM, Han SW, Lee KB, Liu XG, Ratner MA, Mirkin CA (2004) Bioactive protein nanoarrays on nickel oxide surfaces formed by dip-pen nanolithography. Angew Chem Int Ed Engl 43(10):1246–1249

Huo F, Zheng Z, Zheng G, Giam LR, Zhang H, Mirkin CA (2008) Polymer pen lithography. Science 321(5896):1658–1660

Szoszkiewicz R, Okada T, Jones SC, Li T-D, King WP, Marder SR, Riedo E (2007) High-speed, sub-15 nm feature size thermochemical nanolithography. Nano Lett 7(4):1064–1069

Wang D, Kodali VK, Underwood Ii WD, Jarvholm JE, Okada T, Jones SC, Rumi M, Dai Z, King WP, Marder SR, Curtis JE, Riedo E (2009) Thermochemical nanolithography of multifunctional nanotemplates for assembling nano-objects. Adv Funct Mater 19(23):3696–3702

Park J-U, Lee JH, Paik U, Lu Y, Rogers JA (2008) Nanoscale patterns of oligonucleotides formed by electrohydrodynamic jet printing with applications in biosensing and nanomaterials assembly. Nano Lett 8(12):4210–4216

Slater JH, Miller JS, Yu SS, West JL (2011) Fabrication of multifaceted micropatterned surfaces with laser scanning lithography. Adv Funct Mater 21(15):2876–2888

Falconnet D, Pasqui D, Park S, Eckert R, Schift H, Gobrecht J, Barbucci R, Textor M (2004) A novel approach to produce protein nanopatterns by combining nanoimprint lithography and molecular self-assembly. Nano Lett 4(10):1909–1914

Maury P, Escalante M, Peter M, Reinhoudt DN, Subramaniam V, Huskens J (2007) Creating nanopatterns of his-tagged proteins on surfaces by nanoimprint lithography using specific NiNTA-histidine interactions. Small 3(9):1584–1592

Amsden JJ, Domachuk P, Gopinath A, White RD, Negro LD, Kaplan DL, Omenetto FG (2010) Rapid nanoimprinting of silk fibroin films for biophotonic applications. Adv Mater 22(15):1746–1749

Chen J, Seeman NC (1991) Synthesis from DNA of a molecule with the connectivity of a cube. Nature 350(6319):631–633

Rothemund PWK (2006) Folding DNA to create nanoscale shapes and patterns. Nature 440(7082):297–302

Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L (2004) Building programmable jigsaw puzzles with RNA. Science 306(5704):2068–2072

Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, Golas MM, Sander B, Stark H, Oliveira CLP, Pedersen JS, Birkedal V, Besenbacher F, Gothelf KV, Kjems J (2009) Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459(7243):73–76

Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH (2003) DNA-templated self-assembly of protein arrays and highly conductive nanowires. Science 301(5641):1882–1884

Voigt NV, Torring T, Rotaru A, Jacobsen MF, Ravnsbaek JB, Subramani R, Mamdouh W, Kjems J, Mokhir A, Besenbacher F, Gothelf KV Single-molecule chemical reactions on DNA origami. Nat Nano 5(3):200–203

Kershner RJ, Bozano LD, Micheel CM, Hung AM, Fornof AR, Cha JN, Rettner CT, Bersani M, Frommer J, Rothemund PWK, Wallraff GM (2009) Placement and orientation of individual DNA shapes on lithographically patterned surfaces. Nat Nano 4(9):557–561

Cavalcanti-Adam EA, Volberg T, Micoulet A, Kessler H, Geiger B, Spatz JP (2007) Cell spreading and focal adhesion dynamics are regulated by spacing of integrin ligands. Biophys J 92(8):2964–2974

Glass R, Arnold M, Blümmel J, Küller A, Möller M, Spatz JP (2003) Micro-nanostructured interfaces fabricated by the use of inorganic block copolymer micellar monolayers as negative resist for electron-beam lithography. Adv Funct Mater 13(7):569–575

Arnold M, Cavalcanti-Adam EA, Glass R, Blümmel J, Eck W, Kantlehner M, Kessler H, Spatz JP (2004) Activation of integrin function by nanopatterned adhesive interfaces. ChemPhysChem 5(3):383–388

Wu M, Holowka D, Craighead HG, Baird B (2004) Visualization of plasma membrane compartmentalization with patterned lipid bilayers. Proc Natl Acad Sci USA 101(38):13798–13803

Sekula S, Fuchs J, Weg-Remers S, Nagel P, Schuppler S, Fragala J, Theilacker N, Franzreb M, Wingren C, Ellmark P, Borrebaeck CAK, Mirkin CA, Fuchs H, Lenhert S (2008) Multiplexed lipid dip-pen nanolithography on subcellular scales for the templating of functional proteins and cell culture. Small 4(10):1785–1793

Coyer SR, Garcia AJ, Delamarche E (2007) Facile preparation of complex protein architectures with sub-100-nm resolution on surfaces. Angew Chem Int Ed Engl 46(36):6837–6840

Solis DJ, Coyer SR, García AJ, Delamarche E (2010) Large-scale arrays of aligned single viruses. Adv Mater 22(1):111–114

Vega RA, Maspoch D, Shen CKF, Kakkassery JJ, Chen BJ, Lamb RA, Mirkin CA (2006) Functional antibody arrays through metal ion-affinity templates. ChemBioChem 7(11):1653–1657

Vega RA, Shen CKF, Maspoch D, Robach JG, Lamb RA, Mirkin CA (2007) Monitoring single-cell infectivity from virus-particle nanoarrays fabricated by parallel Dip-Pen nanolithography. Small 3(9):1482–1485

Kim KH, Kim JD, Kim YJ, Kang SH, Jung SY, Jung H (2008) Protein immobilization without purification via Dip-Pen nanolithography. Small 4(8):1089–1094

Kim JD, Ahn D-G, Oh J-W, Park W, Jung H (2008) Ribosome display and Dip-Pen nanolithography for the fabrication of protein nanoarrays. Adv Mater 20(17):3349–3353

Stepanauskas R, Sieracki ME (2007) Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc Natl Acad Sci USA 104(21):9052–9057

Sirbuly DJ, Law M, Yan H, Yang P (2005) Semiconductor nanowires for subwavelength photonics integration. J Phys Chem B 109(32):15190–15213

Jonsson MP, Dahlin AB, Jonsson P, Hook F (2008) Nanoplasmonic biosensing with focus on short-range ordered nanoholes in thin metal films. Biointerphases 3(3):FD30–FD40

Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, Wilson WH, Yang EC, Duffy S, Bhattacharya D Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332 (6030):714–717

Rakickas T, Gavutis M, Reichel A, Piehler J, Liedberg B, Valiokas R (2008) Protein-protein interactions in reversibly assembled nanopatterns. Nano Lett 8(10):3369–3375