Multiplexed VeraCode bead-based serological immunoassay for colorectal cancer

Journal of Immunological Methods - Tập 400 - Trang 58-69 - 2013
Heather P. Ostendorff1, Amany Awad1, Karen I. Braunschweiger1, Ziying Liu1, Zhi Wan1, Kenneth J. Rothschild1,2, Mark J. Lim1
1AmberGen, Inc., 313 Pleasant Street, Watertown, MA 02472, USA
2Molecular Biophysics Laboratory, Department of Physics and Photonics Center, Boston University, Boston, MA 02215, USA

Tài liệu tham khảo

Ahlquist, 1997, Fecal occult blood testing for colorectal cancer. Can we afford to do this?, Gastroenterol. Clin. North Am., 26, 41, 10.1016/S0889-8553(05)70282-X Anderson, 2005, The sentinel within: exploiting the immune system for cancer biomarkers, J. Proteome Res., 4, 1123, 10.1021/pr0500814 Anderson, 2011, Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer, J. Proteome Res., 10, 85, 10.1021/pr100686b Babel, 2009, Identification of tumor-associated autoantigens for the diagnosis of colorectal cancer in serum using high density protein microarrays, Mol. Cell. Proteomics, 8, 2382, 10.1074/mcp.M800596-MCP200 Belousov, 2008, Cancer-associated antigens and antigen arrays in serological diagnostics of malignant tumors, Biochemistry (Mosc), 73, 562, 10.1134/S000629790805009X Bentley, 2008, Accurate whole human genome sequencing using reversible terminator chemistry, Nature, 456, 53, 10.1038/nature07517 Berger, 2006, Colorectal cancer screening using stool DNA analysis in clinical practice: early clinical experience with respect to patient acceptance and colonoscopic follow-up of abnormal tests, Clin. Colorectal Cancer, 5, 338, 10.3816/CCC.2006.n.003 Brown, 2012, Serum macrophage inhibitory cytokine-1 (MIC-1/GDF15): a potential screening tool for the prevention of colon cancer?, Cancer Epidemiol. Biomarkers Prev., 21, 337, 10.1158/1055-9965.EPI-11-0786 Casiano, 2006, Tumor-associated antigen arrays for the serological diagnosis of cancer, Mol. Cell. Proteomics, 5, 1745, 10.1074/mcp.R600010-MCP200 Chapman, 2008, Autoantibodies in lung cancer: possibilities for early detection and subsequent cure, Thorax, 63, 228, 10.1136/thx.2007.083592 Chee, 1996, Accessing genetic information with high-density DNA arrays, Science, 274, 610, 10.1126/science.274.5287.610 Chen, 2007, Autoantibodies to Ca2+ binding protein Calnuc is a potential marker in colon cancer detection, Int. J. Oncol., 30, 1137 Creeden, 2011, Serum tests for colorectal cancer screening, Mol. Diagn. Ther., 15, 129, 10.1007/BF03256403 Davies, 2005, Colorectal cancer screening: prospects for molecular stool analysis, Nat. Rev. Cancer, 5, 199, 10.1038/nrc1569 de Voer, 2008, Development of a fluorescent-bead-based multiplex immunoassay to determine immunoglobulin G subclass responses to Neisseria meningitidis serogroup A and C polysaccharides, Clin. Vaccine Immunol., 15, 1188, 10.1128/CVI.00478-07 Dettloff, 2008, Nucleic acid amplification of individual molecules in a microfluidic device, Anal. Chem., 80, 4208, 10.1021/ac800339w Doolittle, 2001, Detection of the mutated K-Ras biomarker in colorectal carcinoma, Exp. Mol. Pathol., 70, 289, 10.1006/exmp.2001.2364 Fodor, 1991, Light-directed, spatially addressable parallel chemical synthesis, Science, 251, 767, 10.1126/science.1990438 Fouda, 2006, Multiplex assay for simultaneous measurement of antibodies to multiple Plasmodium falciparum antigens, Clin. Vaccine Immunol., 13, 1307, 10.1128/CVI.00183-06 Fulton, 1997, Advanced multiplexed analysis with the FlowMetrix system, Clin. Chem., 43, 1749, 10.1093/clinchem/43.9.1749 Gunderson, 2004, Decoding randomly ordered DNA arrays, Genome Res., 14, 870, 10.1101/gr.2255804 Hellemons, 2012, Growth-differentiation factor 15 predicts worsening of albuminuria in patients with type 2 diabetes, Diabetes Care, 35, 2340, 10.2337/dc12-0180 Howlader, 2012 Hudson, 2007, Identification of differentially expressed proteins in ovarian cancer using high-density protein microarrays, Proc. Natl. Acad. Sci. U. S. A., 104, 17494, 10.1073/pnas.0708572104 Keefe, 2001, One-step purification of recombinant proteins using a nanomolar-affinity streptavidin-binding peptide, the SBP-Tag, Protein Expr. Purif., 23, 440, 10.1006/prep.2001.1515 Koziol, 2003, Recursive partitioning as an approach to selection of immune markers for tumor diagnosis, Clin. Cancer Res., 9, 5120 Lin, 2009, Medium- to high-throughput SNP genotyping using VeraCode microbeads, Methods Mol. Biol., 496, 129, 10.1007/978-1-59745-553-4_10 Liu, 2009, Evaluation of tumour-associated antigen (TAA) miniarray in immunodiagnosis of colon cancer, Scand. J. Immunol., 69, 57, 10.1111/j.1365-3083.2008.02195.x Marchio, 2011, Revisiting the technical validation of tumour biomarker assays: how to open a Pandora's box, BMC Med., 9, 41, 10.1186/1741-7015-9-41 Margulies, 2005, Genome sequencing in microfabricated high-density picolitre reactors, Nature, 437, 376, 10.1038/nature03959 Nozoe, 2007, Clinicopathologic significance in serum presence of anti-p53 antibody in patients with colorectal carcinoma, Hepatogastroenterology, 54, 1422 Opalka, 2003, Simultaneous quantitation of antibodies to neutralizing epitopes on virus-like particles for human papillomavirus types 6, 11, 16, and 18 by a multiplexed luminex assay, Clin. Diagn. Lab. Immunol., 10, 108, 10.1128/CDLI.10.1.108-115.2003 Plant, 1991, Immobilization of binding proteins on nonporous supports. Comparison of protein loading, activity, and stability, Appl. Biochem. Biotechnol., 30, 83, 10.1007/BF02922025 Reuschenbach, 2009, A systematic review of humoral immune responses against tumor antigens, Cancer Immunol. Immunother., 58, 1535, 10.1007/s00262-009-0733-4 Rex, 2009, American college of gastroenterology guidelines for colorectal cancer screening 2008, Am. J. Gastroenterol., 104, 739, 10.1038/ajg.2009.104 Saleh, 2004, p53 autoantibodies from patients with colorectal cancer recognize common epitopes in the N- or C-terminus of p53, Int. J. Oncol., 25, 1149 Schlottmann, 2006, A novel chemistry for conjugating pneumococcal polysaccharides to Luminex microspheres, J. Immunol. Methods, 309, 75, 10.1016/j.jim.2005.11.019 Storr, 2006, Use of autoantibodies in breast cancer screening and diagnosis, Expert. Rev. Anticancer. Ther., 6, 1215, 10.1586/14737140.6.8.1215 Su, 2012, Role of serum carcinoembryonic antigen in the detection of colorectal cancer before and after surgical resection, World J. Gastroenterol., 18, 2121, 10.3748/wjg.v18.i17.2121 Subramanian, 2004, Adherence with colorectal cancer screening guidelines: a review, Prev. Med., 38, 536, 10.1016/j.ypmed.2003.12.011 Toth, 2012, Detection of methylated SEPT9 in plasma is a reliable screening method for both left- and right-sided colon cancers, PloS One, 7, e46000, 10.1371/journal.pone.0046000 van't Veer, 2002, Gene expression profiling predicts clinical outcome of breast cancer, Nature, 415, 530, 10.1038/415530a Vijan, 2004, Projections of demand and capacity for colonoscopy related to increasing rates of colorectal cancer screening in the United States, Aliment. Pharmacol. Ther., 20, 507, 10.1111/j.1365-2036.2004.01960.x Walhout, 2000, GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes, Methods Enzymol., 328, 575, 10.1016/S0076-6879(00)28419-X Wallin, 2011, Growth differentiation factor 15: a prognostic marker for recurrence in colorectal cancer, Br. J. Cancer, 104, 1619, 10.1038/bjc.2011.112 Waterboer, 2006, Suppression of non-specific binding in serological Luminex assays, J. Immunol. Methods, 309, 200, 10.1016/j.jim.2005.11.008 Wollert, 2012, Growth differentiation factor 15 in heart failure: an update, Curr. Heart Fail. Rep., 9, 337, 10.1007/s11897-012-0113-9 Woolf, 2004, A smarter strategy? Reflections on fecal DNA screening for colorectal cancer, N. Engl. J. Med., 351, 2755, 10.1056/NEJMe048259 Xue, 2010, Identification of serum biomarkers for colorectal cancer metastasis using a differential secretome approach, J. Proteome Res., 9, 545, 10.1021/pr9008817 Zhang, 2003, Enhancement of antibody detection in cancer using panel of recombinant tumor-associated antigens, Cancer Epidemiol. Biomarkers Prev., 12, 136