Monitoring Lactobacillus plantarum in grass silages with the aid of 16S rDNA-based quantitative real-time PCR assays
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Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2
Applied Biosystems, Creating standard curves with genomic DNA or plasmid DNA templates for use in quantitative PCR, published online at URL: http://www.appliedbiosystems.com/support/tutorials/pdf/quant_pcr.pdf,2003.
Bhagwat, 2003, Simultaneous detection of Escherichia coli O157:H7, Listeria monocytogenes and Salmonella strains by real-time PCR, Int. J. Food Microbiol., 84, 217, 10.1016/S0168-1605(02)00481-6
Chagnaud, 2001, Rapid PCR-based procedure to identify lactic acid bacteria: application to six common Lactobacillus species, J. Microbiol. Meth., 44, 139, 10.1016/S0167-7012(00)00244-X
Cheng, 2003, Rapid detection of Campylobacter jejuni in chicken rinse water by melting-peak analysis of amplicons in real-time polymerase chain reaction, J. Food Prot., 66, 1343, 10.4315/0362-028X-66.8.1343
Collins, 1991, Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA, FEMS Microbiol. Lett., 77, 5, 10.1111/j.1574-6968.1991.tb04313.x
Cusick, 2000, Use of a single, triplicate arbitrarily primed-PCR procedure for molecular fingerprinting of lactic acid bacteria, Appl. Environ. Microbiol., 66, 2227, 10.1128/AEM.66.5.2227-2231.2000
Delaherche, 2004, Detection and quantification of Brettanomyces bruxellensis and ‘ropy’ Pediococcus damnosus strains in wine by real-time polymerase chain reaction, J. Appl. Microbiol., 97, 910, 10.1111/j.1365-2672.2004.02334.x
Dionisi, 2003, Power analysis for real-time PCR quantification of genes in activated sludge and analysis of the variability introduced by DNA extraction, Appl. Environ. Microbiol., 69, 6597, 10.1128/AEM.69.11.6597-6604.2003
Ennahar, 2003, Phylogenetic diversity of lactic acid bacteria associated with paddy rice silage as determined by 16S ribosomal DNA analysis, Appl. Environ. Microbiol., 69, 444, 10.1128/AEM.69.1.444-451.2003
Greiner, 2001, Quantitative detection of Streptococcus pneumonie in nasopharyngal secretions by real-time PCR, J. Clin. Microbiol., 39, 3129, 10.1128/JCM.39.9.3129-3134.2001
Hupfer, 1999, The effect of ensiling on PCR-based detection of genetically modified Bt maize, Eur. Food Res. Technol., 209, 301, 10.1007/s002170050498
Idler, 2000
Idler, 2002, Homemade starter cultures for silage, Landtechnik, 57, 261
Johansson, 1995, Randomly amplified polymorphic DNA (RAPD) for rapid typing of Lactobacillus plantarum strains, Lett. Appl. Microbiol., 21, 155, 10.1111/j.1472-765X.1995.tb01030.x
Klocke, 2004, Den Bakterien auf der Spur: Marker-gestützte Detektion von Starterkulturen für die Grünfutter-Silierung, Agrartech. Forsch., 10, 98
Klocke, 2004, Development of a 16S rDNA-targeted PCR assay for monitoring of Lactobacillus plantarum and Lact. rhamnosus during co-cultivation for production of inoculants for silages, Lett. Appl. Microbiol., 39, 267, 10.1111/j.1472-765X.2004.01575.x
Kung, 2003, Silage additives, 305
Lyons, 2000, Quantitative real-time PCR for Porphyromonas gingivalis and total bacteria, J. Clin. Microbiol., 38, 2362, 10.1128/JCM.38.6.2362-2365.2000
McDonald, 1991
Nigatu, 2001, Randomly amplified polymorphic DNA (RAPD) profiles for the distinction of Lactobacillus species, Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol., 79, 1, 10.1023/A:1010290403124
Nour, 1998, 16S–23S and 23S–5S intergenic spacer regions of lactobacilli, nucleotide sequence, secondary structure and comparative analysis, Res. Microbiol., 149, 433, 10.1016/S0923-2508(98)80326-4
O’Kiely, 1991, Comparison of three silo types used to study in-silo processes, Ir. J. Agric. Res., 30, 53
Pahl, 1999, Quantitative detection of Borrelia burgdorferi by real-time PCR, J. Clin. Microbiol., 37, 1958, 10.1128/JCM.37.6.1958-1963.1999
Pahlow, 2003, Microbiology of ensiling, 31
Rheims, 1999, Application of nested polymerase chain reaction for the detection of as yet uncultured organisms of the class Actinobacteria in environmental samples, Environ. Microbiol., 1, 137, 10.1046/j.1462-2920.1999.00013.x
Sambrook, 2001
Song, 2000, Rapid identification of 11 human intestinal Lactobacillus species by multiplex PCR assays using group- and species-specific primers derived from the 16S–23S rRNA intergenic spacer region and its flanking 23S rRNA, FEMS Microbiol. Lett., 187, 167
Takai, 2000, Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes, Appl. Environ. Microbiol., 66, 5066, 10.1128/AEM.66.11.5066-5072.2000
Tannock, 1999, Identification of Lactobacillus isolates from the gastrointestinal tract, silage, and yoghurt by 16S–23S rRNA gene intergenic spacer region sequence comparisons, Appl. Environ. Microbiol., 65, 4264, 10.1128/AEM.65.9.4264-4267.1999
Tilsala-Timisjarvi, 1998, Strain-specific identification of probiotic Lactobacillus rhamnosus with randomly amplified polymorphic DNA-derived PCR primers, Appl. Environ. Microbiol., 64, 4816, 10.1128/AEM.64.12.4816-4819.1998
Validov, 1998, Rapid identification of Lactobacillus plantarum by RAPD-PCR, Microbiology, 67, 317
Van Kessel, 2003, Using a portable real-time PCR assay to detect Salmonella in raw milk, J. Food Prot., 66, 1762, 10.4315/0362-028X-66.10.1762
Weinberg, 1996, New trends and opportunities in the development and use of inoculants for silage, FEMS Microbiol. Rev., 19, 53, 10.1111/j.1574-6976.1996.tb00253.x
Whiter, 2001, The effect of a dry or liquid application of Lactobacillus plantarum MTD1 on the fermentation of alfalfa silage, J. Dairy Sci., 84, 2195, 10.3168/jds.S0022-0302(01)74666-8
Yang, 2003, Application of real-time PCR for quantitative detection of Campylobacter jejuni in poultry, milk and environmental water, FEMS Immunol. Med. Microbiol., 38, 265, 10.1016/S0928-8244(03)00168-8
