Molecules, ecology, morphology, and songs in concert: how many species is Arremon torquatus (Aves: Emberizidae)?

Biological Journal of the Linnean Society - Tập 99 Số 1 - Trang 152-176
Carlos Daniel Cadena1,2, Andrés M. Cuervo3
1Department of Biology and International Center for Tropical Ecology, University of Missouri – St Louis, St Louis, MO 63121, USA
2Laboratorio de Biología Evolutiva de Vertebrados, Departamento de Ciencias Biológicas, Universidad de Los Andes, Bogotá, Colombia
3Dept of Biological Sciences and Museum of Natural Science, Louisiana State University, Baton Rouge, LA, 70803, USA.

Tóm tắt

Từ khóa


Tài liệu tham khảo

American Ornithologists' Union, 1998, Checklist of North American birds

Avise, 1997, Phylogenetics and the origin of species, Proceedings of the National Academy of Sciences of the United States of America, 94, 7748, 10.1073/pnas.94.15.7748

Baptista, 1996, Ecology and evolution of acoustic communication in birds, 39

Baum, 1998, Individuality and the existence of species through time, Systematic Biology, 47, 641, 10.1080/106351598260644

Bensch, 2006, Conflicting patterns of mitochondrial and nuclear DNA diversity in Phylloscopus warblers, Molecular Ecology, 15, 161, 10.1111/j.1365-294X.2005.02766.x

Bond, 2008, An integrative method for delimiting cohesion species: finding the population-species interface in a group of Californian trapdoor spiders with extreme genetic divergence and geographic structuring, Systematic Biology, 57, 628, 10.1080/10635150802302443

Brumfield, 2005, Mitochondrial variation in Bolivian populations of the variable antshrike (Thamnophilus caerulescens), Auk, 122, 414, 10.1642/0004-8038(2005)122[0414:MVIBPO]2.0.CO;2

Brumfield, 2001, Evolutionary implications of divergent clines in an avian (Manacus: Aves) hybrid zone, Evolution, 55, 2070, 10.1111/j.0014-3820.2001.tb01322.x

Cadena, 2007, Testing the role of interspecific competition in the evolutionary origin of elevational zonation: an example with Buarremon brush-finches (Aves, Emberizidae) in the neotropical mountains, Evolution, 61, 1120, 10.1111/j.1558-5646.2007.00095.x

Cadena, 2007, Evolutionary differentiation in the Neotropical montane region: molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae), Molecular Phylogenetics and Evolution, 44, 993, 10.1016/j.ympev.2006.12.012

Cadena, 2007, Limits to elevational distributions in two species of emberizine finches: disentangling the role of interspecific competition, autoecology, and geographic variation in the environment, Ecography, 30, 491, 10.1111/j.2007.0906-7590.05045.x

Carling, 2009, Speciation in Passerina buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation, Molecular Ecology, 18, 834, 10.1111/j.1365-294X.2008.04038.x

Carpenter, 1993, DOMAIN: a flexible modelling procedure for mapping potential distributions of plants and animals, Biodiversity and Conservation, 2, 667, 10.1007/BF00051966

Chapman, 1923, Mutation among birds in the genus Buarremon, Bulletin of the American Museum of Natural History, 48, 243

Coyne, 2004, Speciation

Cracraft, 1989, Speciation and its consequences, 28

Cuervo, 2003, New and noteworthy bird records from the northern sector of the Western Andes of Colombia, Bulletin of the British Ornithologists' Club, 123, 7

De Queiroz, 1998, Endless forms: species and speciation, 57

De Queiroz, 2005, A unified concept of species and its consequences for the future of taxonomy, Proceedings of the California Academy of Sciences, 56, 196

De Queiroz, 1988, Phylogenetic systematics and the species problem, Cladistics, 4, 317, 10.1111/j.1096-0031.1988.tb00518.x

Donegan, 2007, Range extensions, taxonomic and ecological notes from Serranía de los Yariguíes, Colombia's new national park, Bulletin of the British Ornithologists' Club, 127, 172

Donoghue, 1985, A critique of the biological species concept and recommendations for a phylogenetic alternative, Bryologist, 88, 172, 10.2307/3243026

Doyle, 1995, The irrelevance of allele tree topologies for species delimitation, and a non-topological alternative, Systematic Botany, 20, 574, 10.2307/2419811

Elith, 2006, Novel methods improve prediction of species' distributions from occurrence data, Ecography, 29, 129, 10.1111/j.2006.0906-7590.04596.x

Fjeldså, 2005, Illicit crops and armed conflict as constraints on biodiversity conservation in the Andes region, AmBio, 34, 205, 10.1579/0044-7447-34.3.205

Funk, 2006, Ecological divergence exhibits consistently positive associations with reproductive isolation across disparate taxa, Proceedings of the National Academy of Sciences of the United States of America, 103, 3209, 10.1073/pnas.0508653103

Guisan, 2005, Predicting species distribution: offering more than simple habitat models, Ecology Letters, 8, 993, 10.1111/j.1461-0248.2005.00792.x

Helbig, 2002, Guidelines for assigning species rank, Ibis, 144, 518, 10.1046/j.1474-919X.2002.00091.x

Hijmans, 2005, Very high resolution interpolated climate surfaces for global land areas, International Journal of Climatology, 25, 1965, 10.1002/joc.1276

Hill, 2002, Predicting species occurrences: issues of accuracy and scale, 97

Hooghiemstra, 2004, Quaternary ice-age dynamics in the Colombian Andes: developing an understanding of our legacy, Philosophical Transactions of the Royal Society of London Series B, Biological Sciences, 359, 173, 10.1098/rstb.2003.1420

Hooghiemstra, 2006, The paleobotanical record of Colombia: implications for biogeography and biodiversity, Annals of the Missouri Botanical Garden, 93, 297, 10.3417/0026-6493(2006)93[297:TPROCI]2.0.CO;2

Hutchinson, 1957, Concluding remarks, Cold Spring Harbor Symposia on Quantitative Biology, 22, 415, 10.1101/SQB.1957.022.01.039

Irwin, 2001, Speciation in a ring, Nature, 409, 333, 10.1038/35053059

Irwin, 2008, Call divergence is correlated with geographic and genetic distance in greenish warblers (Phylloscopus trochiloides): a strong role for stochasticity in signal evolution?, Journal of Evolutionary Biology, 21, 435, 10.1111/j.1420-9101.2007.01499.x

Isler, 2005, Clinal variation in vocalizations of an antbird (Thamnophilidae) and implications for defining species limits, Auk, 122, 433, 10.1642/0004-8038(2005)122[0433:CVIVOA]2.0.CO;2

Isler, 1998, Use of vocalizations to establish species limits in antbirds (Passeriformes:Thamnophilidae), Auk, 115, 577, 10.2307/4089407

Jackson, 2000, Responses of plant populations and communities to environmental changes of the late Quaternary, Paleobiology, 26, 194, 10.1666/0094-8373(2000)26[194:ROPPAC]2.0.CO;2

Johnson NK Remsen JV Jr Cicero C 1999 Resolution of the debate over species concepts in ornithology: a new comprehensive biologic species concept 1470 1482

Kearney, 2006, Habitat, environment and niche: what are we modelling?, Oikos, 115, 186, 10.1111/j.2006.0030-1299.14908.x

Kearney, 2004, Mapping the fundamental niche: physiology, climate, and the distribution of a nocturnal lizard, Ecology, 85, 3119, 10.1890/03-0820

Killeen, 2007, Dry spots and wet spots in the Andean hotspot, Journal of Biogeography, 34, 1357, 10.1111/j.1365-2699.2006.01682.x

Knowles, 2007, Delimiting species without monophyletic gene trees, Systematic Biology, 56, 887, 10.1080/10635150701701091

Krabbe, 2001, Birds of the Ecuadorian Highlands: The Upper Montane and Paramo Zones of Ecuador

Krabbe, 2003, Birds of Ecuador: Sounds and Photographs, DVD-ROM

Krosby, 2009, A 2000 km genetic wake yields evidence for northern glacial refugia and hybrid zone movement in a pair of songbirds, Proceedings of the Royal Society of London Series B, Biological Sciences, 276, 615, 10.1098/rspb.2008.1310

Lovette, 2004, Molecular phylogeny and plumage signal evolution in a trans Andean and circum Amazonian avian species complex, Molecular Phylogenetics and Evolution, 32, 512, 10.1016/j.ympev.2004.01.007

Mallet, 2008, Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation, Philosophical Transactions of the Royal Society of London Series B, Biological Sciences, 363, 2971, 10.1098/rstb.2008.0081

Mayer, 2000, Birds of Bolivia, CD-ROM

Mayr, 1942, Systematics and the origin of species

Mayr, 1963, Animal species and evolution, 10.4159/harvard.9780674865327

Mishler, 1982, Species concepts: a case for pluralism, Systematic Zoology, 31, 491, 10.2307/2413371

Nichols, 2001, Gene trees and species trees are not the same, Trends in Ecology and Evolution, 16, 358, 10.1016/S0169-5347(01)02203-0

Olmstead, 1995, Species concepts and plesiomorphic species, Systematic Biology, 20, 623

Olson, 2004, Illumination of cryptic species boundaries in long-tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale), with new insights into geographic variation and distributional constraints, Biological Journal of the Linnean Society, 83, 1, 10.1111/j.1095-8312.2004.00366.x

Parsons, 1993, Unidirectional spread of secondary sexual plumage traits across an avian hybrid zone, Science, 260, 1643, 10.1126/science.260.5114.1643

Paynter, 1970, Check-list of birds of the world, 13th, 3

Paynter, 1978, Biology and evolution of the avian genus Atlapetes (Emberizinae), Bulletin of the Museum of Comparative Zoology, 148, 323

Phillips, 2006, Maximum entropy modeling of species geographic distributions, Ecological Modelling, 190, 231, 10.1016/j.ecolmodel.2005.03.026

Podos, 2004, Bird song: the interface of evolution and mechanism, Annual Review of Ecology, Evolution and Systematics, 35, 55, 10.1146/annurev.ecolsys.35.021103.105719

Price, 2002, The evolution of F1 postzygotic incompatibilities in birds, Evolution, 56, 2083, 10.1111/j.0014-3820.2002.tb00133.x

Price, 2002, Reconstructing the evolution of complex bird song in the oropendolas, Evolution, 56, 1514, 10.1111/j.0014-3820.2002.tb01462.x

Pulliam, 2000, On the relationship between niche and distribution, Ecology Letters, 3, 349, 10.1046/j.1461-0248.2000.00143.x

Raxworthy, 2007, Applications of ecological niche modeling for species delimitation: a review and empirical evaluation using day geckos (Phelsuma) from Madagascar, Systematic Biology, 56, 907, 10.1080/10635150701775111

Remsen, 1984, High incidence of ‘leapfrog’ pattern of geographic variation in Andean birds: implications for the speciation process, Science, 224, 171, 10.1126/science.224.4645.171

Remsen, 2005, Pattern, process, and rigor meet classification, Auk, 122, 403, 10.1642/0004-8038(2005)122[0403:PPARMC]2.0.CO;2

Remsen JV Jr Cadena CD Jaramillo A Nores M Pacheco JF Robbins MB Schulenberg TS Stiles FG Stotz DF Zimmer KJ 2009 A classification of the bird species of South America http://www.museum.lsu.edu/~Remsen/SACCBaseline.html

Remsen, 1995, Distribution patterns of Buarremon Brush-finches (Emberizinae) and interspecific competition in Andean birds, Auk, 112, 225, 10.2307/4088781

Ribot, 2009, Does the ring species concept predict vocal variation in the crimson rosella, Platycercus elegans, complex?, Animal Behaviour, 77, 581, 10.1016/j.anbehav.2008.10.029

Ridgely, 1989, The birds of South America. Vol 1, The oscine passerines

Rieseberg, 2001, The biological reality of species: gene flow, selection, and collective evolution, Taxon, 50, 47, 10.2307/1224511

Rieseberg, 2006, The nature of plant species, Nature, 440, 524, 10.1038/nature04402

Rising, 1983, The Great Plains hybrid zones, Current Ornithology, 1, 131, 10.1007/978-1-4615-6781-3_5

Rissler, 2007, Adding more ecology into species delimitation: ecological niche models and phylogeography help define cryptic species in the black salamander (Aneides flavipunctatus), Systematic Biology, 56, 924, 10.1080/10635150701703063

Rosenberg, 2007, Statistical tests for taxonomic distinctiveness from observations of monophyly, Evolution, 61, 317, 10.1111/j.1558-5646.2007.00023.x

Shaw, 2002, Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: what mtDNA reveals and conceals about modes of speciation in Hawaiian crickets, Proceedings of the National Academy of Sciences of the United States of America, 99, 16122, 10.1073/pnas.242585899

Simpson, 1951, The species concept, Evolution, 5, 285, 10.1111/j.1558-5646.1951.tb02788.x

Sites, 2003, Delimiting species: a Renaissance issue in systematic biology, Trends in Ecology and Evolution, 18, 462, 10.1016/S0169-5347(03)00184-8

Sites, 2004, Operational criteria for delimiting species, Annual Review of Ecology, Evolution and Systematics, 35, 199, 10.1146/annurev.ecolsys.35.112202.130128

Snow, 1979, Checklist of birds of the world, 8, 245

Stockman, 2007, Delimiting cohesion species: extreme population structuring and the role of ecological interchangeability, Molecular Ecology, 16, 3374, 10.1111/j.1365-294X.2007.03389.x

Tavares, 2008, Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds, BMC Evolutionary Biology, 8, 81, 10.1186/1471-2148-8-81

Templeton, 1989, Speciation and its consequences, 3

Templeton, 2001, Using phylogeographic analyses of gene trees to test species status and processes, Molecular Ecology, 10, 779, 10.1046/j.1365-294x.2001.01199.x

Uy, 2009, Plumage and song differences mediate species recognition between incipient flycatcher species of the Solomon Islands, Evolution, 63, 153, 10.1111/j.1558-5646.2008.00530.x

Weir, 2006, Divergent timing and patterns of species accumulation in lowland and highland neotropical birds, Evolution, 60, 842, 10.1111/j.0014-3820.2006.tb01161.x

Wetmore, 1984, The birds of the Republic of Panamá. Part 4. - Passeriformes: Hirundinidae (swallows) to Fringillidae (finches)

Wiens, 2005, Niche conservatism: integrating evolution, ecology, and conservation biology, Annual Review of Ecology, Evolution and Systematics, 36, 519, 10.1146/annurev.ecolsys.36.102803.095431

Wiens, 2002, Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus), Systematic Biology, 51, 69, 10.1080/106351502753475880

Yoder, 2005, A multidimensional approach for detecting species patterns in Malagasy vertebrates, Proceedings of the National Academy of Sciences of the United States of America, 102, 6587, 10.1073/pnas.0502092102

Zink, 2008, Mitochondrial DNA under siege in avian phylogeography, Molecular Ecology, 17, 2107, 10.1111/j.1365-294X.2008.03737.x

Zink, 1995, The debate over species concepts and its implications for ornithology, Auk, 112, 701