Molecular variability and phylogenetic relationships among different species and populations of Pratylenchus (Nematoda: Pratylenchidae) as inferred from the analysis of the ITS rDNA

Al-Banna, L., Williamson, V., & Gardner, S. L. (1997). Phylogenetic analysis of nematodes of the genus Pratylenchus using nuclear 26S rDNA. Molecular Phylogenetics and Evolution, 7, 94–102.

Baujard, P., Mounport, D., & Martiny, B. (1990). Étude au microscope electronique a balayage de quatre espèces du genre Pratylenchus Filipjev, 1936 (Nemata: Pratylenchidae). Revue de Nématologie, 13, 203–210.

Café Filho, A. C., & Huang, C. S. (1989). Description of Pratylenchus pseudofallax n. sp. with a key to species of the genus Pratylenchus Filipjev, 1936 (Nematoda: Pratylenchidae). Revue de Nématologie, 12, 7–15.

Castillo, P., & Vovlas, N. (2007). Pratylenchus (Nematoda: Pratylenchidae): Diagnosis, biology, pathogenicity and management. Leiden: Brill Academic, 529 pp.

Corbett, D. C. M., & Clark, S. (1983). Surface structures in the taxonomy of Pratylenchus species. Revue de Nématologie, 6, 85–98.

De Luca, F., Fanelli, E., Di Vito, M., Reyes, A., & De Giorgi, C. (2004a). Comparisons of the sequences of the D3 expansion of the 26S ribosomal genes reveals different degrees of heterogeneity in different populations and species of Pratylenchus from the Mediterranean region. European Journal of Plant Pathology, 110, 949–957.

De Luca, F., Reyes, A., Grunder, J., Kunz, P., Agostinelli, A., De Giorgi, C., et al. (2004b). Characterization and sequence variation in the rDNA region of six nematode species of the genus Longidorus (Nematoda). Journal of Nematology, 36, 147–152.

De Luca, F., Troccoli, A., Duncan, L. W., Subbotin, S. A., Waeyenberge, L., Moens, M., et al. (2010). Characterisation of a population of Pratylenchus hippeastri from bromeliads and description of two related new species, P. floridensis n. sp. and P. parafloridensis n. sp., from grasses in Florida. Nematology, 12, 847–868.

Duncan, L. W., Inserra, R. N., Thomas, W. K., Dunn, D., Mustika, I., Frisse, L. M., et al. (1999). Molecular and morphological analysis of isolates of Pratylenchus coffeae and closely related species. Nematropica, 29, 61–80.

Esser, R. P. (1986). A water agar en face technique. Proceedings of the Helminthological Society of Washington, 53, 254–255.

Frederick, J. J., & Tarjan, A. C. (1989). A compendium of the genus Pratylenchus Filipjev, 1936 (Nemata: Pratylenchidae). Revue de Nématologie, 12, 243–256.

Gasser, R. B., Bott, N. J., Chilton, N. B., Hunt, P., & Beveridge, I. (2008). Toward practical, DNA-based diagnostic methods for parasitic nematodes of livestock-Bionomic and biotechnological implications. Biotechnology Advances, 26, 325–334.

Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98NT. Nucleic Acids Symposium Series, 41, 95–98.

Handoo, Z. A., & Golden, A. M. (1989). A key and diagnostic compendium to the species of the genus Pratylenchus Filipjev, 1936 (lesion nematodes). Journal of Nematology, 21, 202–218.

Handoo, Z. A., Carta, L. K., & Skantar, A. M. (2001). Morphological and molecular characterization of Pratylenchus arlingtoni n. sp., P. convallariae and P. fallax (Nemata: Pratylenchidae). Nematology, 3, 607–618.

Handoo, Z. A., Carta, L. K., & Skantar, A. M. (2008). Taxonomy, morphology and phylogenetics of coffee-associated root-lesion nematodes, Pratylenchus spp. In R. M. Souza (Ed.), Plant-parasitic nematodes of coffee (pp. 29–50). Springer Science + Business Media B.V.

Hernández, M., Jordana, R., Goldaracena, A., & Pinochet, J. (2000). SEM observations of nine species of the genus Pratylenchus Filipjev, 1936 (Nematoda: Pratylenchidae). Journal of Nematode Morphology and Systematics, 3, 165–174.

Holterman, M., Karssen, G., van den Elsen, S., van Megen, H., Bakker, J., & Helder, J. (2009). Small subunit rDNA-based phylogeny of the Tylenchida sheds light on relationships among some high-impact plant parasitic nematodes and the evolution of plant feeding. Phytopathology, 99, 227–235.

Hooper, D. J. (1986). Handling, fixing, staining and mounting nematodes. In J. Southey (Ed.), Laboratory methods for work with plant and soil nematodes (6th ed., pp. 59–80). London, U. K.: Her Majesty’s Stationery Office: Ministry of Agriculture, Fisheries and Food.

Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754–755.

Ibrahim, S. K., Perry, R. N., & Webb, R. M. (1994). Use of isoenzyme and protein phenotypes to discriminate between six Pratylenchus species from Great Britain. The Annals of Applied Biology, 126, 317–327.

Inserra, R. N., Troccoli, A., Gozel, U., Bernard, E. C., Dunn, D., & Duncan, L. (2007). Pratylenchus hippeastri n. sp. (Nematoda: Pratylenchidae) from amaryllis in Florida with notes on P. scribneri and P. hexincisus. Nematology, 9, 25–42.

Loof, P. A. A. (1960). Taxonomic studies on the genus Pratylenchus (Nematoda). Tijdschrift over Plantenziekten, 66, 29–90.

Loof, P. A. A. (1978). The genus Pratylenchus Filipjev, 1936 (Nematoda: Pratylenchidae): a review of its anatomy, morphology, distribution, systematics and identification. Vaxtskyddsrapporter. Jordbruk, 5, 1–50.

Page, R. D. (1996). TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Bioscience, 12, 357–358.

Palomares-Rius, J. E., Castillo, P., Liébanas, G., Vovlas, N., Landa, B. B., Navas-Cortés, J. A., et al. (2010). Description of Pratylenchus hispaniensis n. sp. from Spain and considerations on the phylogenetic relationship among selected genera in the family Pratylenchidae. Nematology, 12, 429–451.

Perry, R. N., Plowright, R. A., & Webb, R. M. (1980). Mating between Pratylenchus penetrans and P. fallax in sterile culture. Nematologica, 26, 125–129.

Roman, J., & Hirschmann, H. (1969). Morphology and morphometrics of six species of Pratylenchus. Journal of Nematology, 1, 363–386.

Sher, S. A., & Allen, M. W. (1953). Revision of the genus Pratylenchus (Nematoda: Tylenchidae). University of California Publications in Zoology, 57, 441–470.

Siddiqi, M. R. (2000). Tylenchida parasites of plants and insects (2nd ed.). Wallingford: CABI.

Subbotin, S. A., Ragsdale, E. J., Mullens, T., Roberts, P., Mundo-Ocampo, M., & Baldwin, J. G. (2008). A phylogenetic framework of root lesion nematodes of the genus Pratylenchus (Nematoda): evidence from the 18S and D2D3 expansion segments of 28S ribosomal RNA genes and morphological characters. Molecular Phylogenetics and Evolution, 48, 491–505.

Swofford, D. L. (2003). PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods) 4.0 Beta. Florida State University.

Tarte, R., & Mai, W. F. (1976). Morphological variation in Pratylenchus penetrans. Journal of Nematology, 8, 185–195.

Taylor, D. P., & Jenkins, W. R. (1957). Variation within the nematode genus Pratylenchus with the descriptions of P. hexincisus n. sp. and P. subpenetrans n. sp. Nematologica, 2, 159–174.

Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680.

Troccoli, A., De Luca, F., Handoo, Z. A., & Di Vito, M. (2008). Morphological and molecular characterization of Pratylenchus lentis n. sp. (Nematoda: Pratylenchidae) from Sicily. Journal of Nematology, 40, 190–196.

Waeyenberge, L., Ryss, A., Moens, M., Pinochet, J., & Vrain, T. C. (2000). Molecular characterization of 18 Pratylenchus species using rDNA restriction fragment length polymorphism. Nematology, 2, 135–142.

Waeyenberge, L., Viaene, N., & Moens, M. (2009). Species-specific duplex PCR for the detection of Pratylenchus penetrans. Nematology, 11, 847–857.