Molecular systematics and biological diversification of Boletales

Agerer R. 1987–1998. Colour Atlas of Ectomycorrhizae. 1st–11th delivery. Schwäbisch Gmünd, Germany: Einhorn Verlag.

———. 1990. Studies on ectomycorrhizae XXIV. Ectomycorrhizae ofChroogomphus helveticusandC. rutilus(Gomphidiaceae, Basidiomycetes) and their relationship to those ofSuillusandRhizopogonNova Hedwig 50:1–63.

———. 1991. Studies on ectomycorrhizae XXXIV. Mycorrhizae ofGomphidius glutinosusand ofG. roseuswith some remarks on Gomphidiaceae (Basidiomycetes). Nova Hedwig 53:127–170.

———. 1999. Never change a functionally successful principle: the evolution of Boletaless. l.(Hymenomycetes, Basidiomycota) as seen from below ground features. Sendtnera 6:5–91.

Arpin N, Kühner R. 1977. Les grandes lignes de la classification des Boletales. Bull Soc Linn Lyon 46:83–108, 181–208.

Bandala VM, Montoya L, Jarvio D. 2004. Two interesting records of boletes found in coffee plantations in eastern Mexico. Persoonia 18:365–380.

Besl H, Bresinsky A. 1997. Chemosystematics of Suillaceae and Gomphidiaceae (suborder Suillineae). Pl Syst Evol 206:223–242.

———, ———, Kämmerer A. 1986. Chemosystematik der Coniophoraceae. Z Mykol 52:277–286.

———, Dorsch R, Fischer M. 1996. Zur verwandtschaftli-chen Stellung der GattungMelanogaster(Melanogastraceae, Basidiomycetes). Z Mycol 62:195–199.

Binder M, Besl H. 2000. 28S rDNA sequence data and chemotaxonomical analyses on the generic concept ofLeccinum(Boletales). A.M.B., Italy. Centro Studi Micologici, Micologia 2000:71–82.

———, ———, Bresinsky A. 1997. Agaricales oder Boletales? Molekularbiologische Befunde zur Zuordnung einiger umstrittener Taxa. Z Mykol 63:189–196.

———, Bresinsky A. 2002a. Derivation of a polymorphic lineage of gasteromycetes from boletoid ancestors. Mycologia 94:85–98.

———, ———. 2002b.Retiboletus, a new genus for a species-complex in the Boletaceae producing retipolides. Feddes Repert 113:30–40.

———, Hibbett DS, Larsson KH, Larsson E, Langer E, Langer G. 2005. The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (homobasidiomycetes). Syst Biodiv 3:113–157.

Both EE. 1993. The Boletes of North America. A compendium. Buffalo, New York: Buffalo Museum of Science. 436 p.

Bresinsky A, Jarosch M, Fischer M, Schönberger I, Wittmann-Bresinsky B. 1999. Polyphyletic relationships withinPaxillus s.l.(Basidiomycetes, Boletales): separation of a southern hemisphere genus. Plant Biol 1:327–333.

Brundrett MC, Kendrick B. 1987. The relationship between the ash bolete (Boletinellus merulioides) and an aphid parasite on ash tree roots. Symbiosis 3:315–319.

Bruns TD, Fogel R, White TJ, Palmer JD. 1989. Accelerated evolution of a false-truffle from a mushroom ancestor. Nature 339:140–142.

———, Shefferson RP. 2004. Evolutionary studies of ectomycorrhizal fungi: recent advances and future directions. Can J Bot 82:1–11.

———, Szaro TM. 1992. Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms. Mol Biol Evol 9:836–855.

———, ———, Gardes M, Cullings KW, Pan JJ, Taylor DL, Horton TR, Kretzer AM, Garbelotto M, Li Y. 1998. A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis. Mol Ecol 7:257–272.

Claridge AW, Trappe JM, Castellano MA. 2001. Australasian truffle-like fungi X.Gymnopaxillus(Basidiomycota, Austropaxillaceae). Aust Syst Bot 14:273–281.

Felsenstein J. 2004. Inferring phylogenies. Sunderland, Massachusetts: Sinauer Associates Inc. 662 p.

Fischer E. 1899–1900. Lycoperdineae, Nidulariineae, Plectobasidiineae (Sclerodermineae). In: Engler A, Prantl K, eds. Die natürlichen Pflanzenfamilien nebst ihren Gattungen und wichtigeren Arten. Leipzig, Germany: Wilhelm Engelmann Verlag. p 313–342.

Fischer M, Binder M. 2004. Species recognition and host-pathogen relationships: a case study in a group of lignicolous basidiomycetes,Phellinus s.l. Mycologia 96: 798–810.

Gilbert JE. 1931. Les Bolets, in les livres du mycologue. Vol. 3. Paris, 254 p.

Gill M, Steglich W. 1987. Pigments of fungi (Macromycetes). Prod Chem Org Nat Prod 51:1–317.

Grubisha LC, Trappe JM, Molina R, Spatafora JW. 2001. Biology of the ectomycorrhizal genusRhizopogonV. Phylogenetic relationships in the Boletales inferred from LSU rDNA data. Mycologia 93:82–89.

Hibbett DS. 2004. Trends in morphological evolution in homobasidiomycetes inferred using maximum likelihood: a comparison of binary and multistate approaches. Syst Biol 53:889–903.

———, Binder M. 2002. Evolution of complex fruiting-body morphologies in homobasidiomycetes. Proc R Soc Lond B 269:1963–1969.

———, Gilbert L-B, Donoghue MJ. 2000. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature 407:506–508.

———, Pine E, Langer E, Langer G, Donoghue MJ. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proc Natl Acad Sci USA 94:12002–12006.

Hughey BD, Adams GC, Bruns TD, Hibbett DS. 2000. Phylogeny ofCalostoma, the gelatinous-stalked puffball, based on nuclear and mitochondrial ribosomal DNA sequences. Mycologia 92:94–104.

Jarosch M. 2001. Zur molekularen Systematik der Boletales: Coniophorineae, Paxillineae und Suillineae. Bibl Mycol 191:1–158.

———, Besl H. 2001.Leucogyrophana, a polyphyletic genus of the order Boletales (Basidiomycetes). Plant Biol 3: 443–448.

Kämmerer A, Besl H, Bresinsky A. 1985. Omphalotaceae fam. nov. und Paxillaceae, ein chemotaxonomischer Vergleich zweier Pilzfamilien der Boletales. Plant Syst Evol 150:101–117.

Kirk PM, Cannon PF, David JC, Stalpers JA. 2001. Ainsworth and Bisby’s Dictionary of the Fungi. 9th ed. Cambridge, United Kingdom: CAB International University Press.

Kõljalg U, Larsson K-H, Abarenkov K, Nilsson RH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T, Sen R, Taylor AFS, Tedersoo L, Vralstad T, Ursing BM. 2005. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol 166:1063–1068.

Kretzer AM, Bruns TD. 1999. Use ofatp6 in fungal phylogenetics: an example from the Boletales. Mol Phyl Evol 13:483–492.

Larsson KH, Larsson E, Kõljalg U. 2004. High phylogenetic diversity among corticioid homobasidomycetes. Mycol Res 108:983–1002.

Lutzoni F, Pagel M, Reeb V. 2001. Major fungal lineages derived from lichen-symbiotic ancestors. Nature 411: 937–940.

Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo J-M, Ge Z-W, Yang Z-L, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:984–997.

Miller OK. 1964. Monograph ofChroogomphus(Gomphidiaceae). Mycologia 56:526–549.

Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Aime MC, Hofstetter V, Verduin SJW, Larsson E, Baroni TJ, Thorn RG, Jacobsson S, Clémençon H, Miller OK. 2002. One hundred and seventeen clades of euagarics. Mol Phyl Evol 23:357–400.

Moser M. 1983. Die Röhrlinge und Blätterpilze (Polyporales, Boletales, Agaricales, Russulales). 5th ed. In: Gams H, ed. Kleine Kryptogamenflora IIb/2. Basidiomyceten. Stuttgart, New York: Gustav Fischer Verlag. 432 p.

Newman EI, Reddell P. 1987. The distribution of mycorrhizas among families of vascular plants. New Phytol 106: 745–751.

Olsson PA, Münzenberger B, Mahmood S, Erland S. 2000. Molecular and anatomical evidence for a three-way association betweenPinus sylvestrisand the ectomycorrhizal fungiSuillus bovinusandGomphidius roseus. Mycol Res 104:1372–1378.

Pagel M, Meade A, Barker D. 2004. Bayesian estimation of ancestral character states on phylogenies. Syst Biol 53: 673–684.

Peintner U, Ladurner H, Simonini G. 2003.Xerocomus cisalpinussp. nov. and the delimitation of species in theX. chrysenteroncomplex based on morphology and rDNA-LSU sequences. Mycol Res 107:659–679.

Pilát A. 1969.Buchwaldoboletus genus novum Boletacearum. Friesia 9:217–218.

Posada D, Crandall KA. 2001. Selecting the best-fit model of nucleotide substitution. Syst Biol 50:580–601.

Raidl S. 1997. Studien zur Ontogenie an Rhizomorphen von Ektomykorrhizen. Bibl Mycol 169:1–184.

Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574.

Savile DBO. 1955. A phylogeny of the Basidiomycetes. Can J Bot 33:60–104.

Singer R. 1986. The Agaricales in modern taxonomy. 4th ed. Königstein, Germany: Koeltz Scientific Books. 981 p.

Smith AH, Thiers HD. 1971. The Boletes of Michigan. Ann Arbor, Michigan: University of Michigan Press. 428 p.

Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.

Szczepka MZ, Sokól S. 1984.Buchwaldoboletus lignicola(Kallenb.) Pilát andPhaeolus schweinitzii(Fr.) Pat. – das Problem ihres gemeinsamen Auftretens. Z Mykol 50:95–99.

Thiers HD. 1984. The secotioid syndrome. Mycologia 76: 1–8.

Trappe JM. 1975. A revision of the genusAlpovawith notes onRhizopogonand the Melanogastraceae. Beih Nova Hedwig 51:270–309.

Watling R. 1970. Boletaceae: Gomphidiaceae: Paxillaceae. In: Henderson DM, Orton PD, Watling R, eds. British fungus flora. Agarics and Boleti I. Edinburgh, Scotland: Royal Botanical Garden. 124 p.