Molecular subtyping of leiomyosarcoma with 3′ end RNA sequencing
Tài liệu tham khảo
Guo, 2015, Clinically relevant molecular subtypes in leiomyosarcoma, Clin. Cancer Res., 10.1158/1078-0432.CCR-14-3141
Lee, 2012, Cyclin D1 as a diagnostic immunomarker for endometrial stromal sarcoma with YWHAE-FAM22 rearrangement, Am. J. Surg. Pathol., 36, 1562, 10.1097/PAS.0b013e31825fa931
Guo, 2013, Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer, Breast Cancer Res., 15, R117, 10.1186/bcr3586
Brunner, 2012, Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers, Genome Biol., 13, R75, 10.1186/gb-2012-13-8-r75
Brunner, 2014, A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions, Genome Biol., 15, R71, 10.1186/gb-2014-15-5-r71
Lee, 2012, 14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma, Proc. Natl. Acad. Sci. U. S. A., 109, 929, 10.1073/pnas.1115528109
Li, 2009, SOAP2: an improved ultrafast tool for short read alignment, Bioinformatics, 25, 1966, 10.1093/bioinformatics/btp336
de Hoon, 2004, Open source clustering software, Bioinformatics, 20, 1453, 10.1093/bioinformatics/bth078
Wilkerson, 2010, ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking, Bioinformatics, 26, 1572, 10.1093/bioinformatics/btq170
Peter, 1987, Silhouettes: a graphical aid to the interpretation and validation of cluster analysis, J. Comput. Appl. Math., 20, 13
Li, 2011, Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data, Stat. Methods Med. Res.
