Molecular phylogeography of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae): A scenario suggested by mitochondrial DNA

Molecular Phylogenetics and Evolution - Tập 37 - Trang 153-164 - 2005
Giuliana Allegrucci1, Valentina Todisco1, Valerio Sbordoni1
1Department of Biology, University of Rome Tor Vergata, via della Ricerca Scientifica, 00133, Rome, Italy

Tài liệu tham khảo

Allegrucci, 1982, Natural and experimental interspecific hybridization between populations of Dolichopoda cave crickets, Experientia, 38, 96, 10.1007/BF01944548 Allegrucci, 1987, Adaptation and speciation of Dolichopoda cave crickets (Orth. Rhaph.): geographic variation of morphometric indices and allozyme frequencies, Biol. J. Linn. Soc., 31, 151, 10.1111/j.1095-8312.1987.tb01986.x Allegrucci, 1992, Evolutionary divergence in Dolichopoda cave crickets: a comparison of single copy DNA hybridization data with allozymes and morphometric distances, J. Evol. Biol., 5, 121, 10.1046/j.1420-9101.1992.5010121.x Allegrucci, 1997, Patterns of gene flow and genetic structure in cave-dwelling crickets of the Tuscan endemic, Dolichopoda schiavazzii (Orthoptera, Rhaphidophoridae), Heredity, 78, 665, 10.1038/hdy.1997.106 Alvarez, 1972, Rotation of the Corsica–Sardinia microplate, Nature, 235, 103 Arbogast, 2002, Estimating divergence times from molecular data on phylogenetic and population genetics timescales, Annu. Rev. Ecol. Syst., 33, 707, 10.1146/annurev.ecolsys.33.010802.150500 Baccetti, B., 1975. Notulae orthopterologicae. XXXII. Una nuova specie di Dolichopoda raccolta sull’Isola del Giglio. Boll. Ist. Entom. Univ. Bologna 31, 205–214. Baccetti, B., 1982. Ortotteri cavernicoli italiani (Notulae orthopterologicae XXXVI). Lav. Soc. Ital. Biogeogr. Verona 1978 (n.s.) 6, 195–200. Baccetti, 1959, Notulae Orthopterologicae. XII. Revisione delle specie italiane del genere Dolichopoda Bol. (Orth. Rhaph.), Redia, 44, 165 Baccetti, 1970, Notulae Orthopterologicae. XXVII. Nuove osservazioni sistematiche su alcune Dolichopoda italiane esaminate anche al microscopio elettronico a scansione, Mem. Soc. Entomol. Ital., 48, 351 Barr, 1985, Speciation in cave faunas, Annu. Rev. Ecol. Syst., 16, 313, 10.1146/annurev.es.16.110185.001525 Bellon, 1977, Le déplacement de la Sardaigne synthèse des données géochronologiques, magmatiques et paléomagnétiques, Bull. Soc. Geol. France, 7, 825, 10.2113/gssgfbull.S7-XIX.4.825 Blondel, 1999 Boccaletti, 1990, Palinspatic restoration and paleogeographic reconstruction of the peri-Thyrrhenian area during the Neogene, Palaeogeogr. Palaeoclimatol. Palaeoecol., 77, 41, 10.1016/0031-0182(90)90097-Q Bromham, 1999, Growing up with dinosaurs: molecular dates and the mammalian radiation, Trends Ecol. Evol., 14, 113, 10.1016/S0169-5347(98)01507-9 Bromham, 2003, The modern molecular clock, Nature, 4, 216 Brower, 1994, Rapid morphological radiation and convergence among races of the butterfly Heliconius hereto inferred from patterns of mitochondrial DNA evolution, Proc. Natl. Acad. Sci. USA, 91, 6491, 10.1073/pnas.91.14.6491 Burgassi, 1983, Elementi di stratigrafia e paleogeografia nelle colline metallifere (Toscana) dal Trias al Quaternario, Memorie della Società Geologica Italiana, 25, 27 Caccone, 2001, Molecular biogeography of cave life: a study using mitochondrial DNA from Bathysciinae beetles, Evolution, 55, 122, 10.1111/j.0014-3820.2001.tb01278.x Capra, 1968, Una nuova specie dell’isola di Capri, Fragm. Entomol., 6, 39 Carchini, 1983, Population size estimates of four species of Dolichopoda in natural and artificial caves of Central Italy (Orth. Raph.), Mém. Biospéol., 10, 341 Carmignani, 1995, Relationships between the tertiary structural evolution of the Sardinia-Corsica-Provencal domain and the northern Apennines, Terra Nova, 7, 128, 10.1111/j.1365-3121.1995.tb00681.x Cesaroni, 1997, Comparing patterns of geographic variation in cave crickets by combining geostatistic methods and Mantel tests, J. Biogeogr., 24, 419, 10.1111/j.1365-2699.1997.00104.x Chopard, 1936, Biospeleologica N. LXIII. Orthopteres et Dermaptéres (Premiere serie), Arch. Zool. Exp. Gen. Paris, 78, 195 Desutter-Grandcolas, 1993, The cricket fauna of Chiapanecan caves (Mexico): systematics, phylogeny and the evolution of troglobitic life (Orthoptera, Grylloidea, Phalangopsidae, Luzarinae), Int. J. Speleol., 22, 1, 10.5038/1827-806X.22.1.1 Di Russo, C., 1993. Adaptations et divergence évolutive des populations des Dolichopodes des Pyrénées orientales, These de Doctorat en Ecologie et Biologie des Populations. Université Paul Sabatier de Toulose, France, 70pp. Di Russo, 1998, Gryllacridoidea, Encyclopaedia Biospeologica, 2, 979 Doyle, 1987, A rapid DNA isolation procedure for small quantities of fresh leaf tissue, Phytochem. Bull., 19, 11 Faith, 1991, Cladistic permutation tests for monophyly and nonmonophyly, Syst. Zool., 40, 366, 10.2307/2992329 Farris, 1970, Methods for computing Wagner trees, Syst. Zool., 18, 374, 10.2307/2412182 Farris, 1994, Testing significance of incongruence, Cladistics, 10, 315, 10.1111/j.1096-0031.1994.tb00181.x Farris, 1995, Constructing a significance test for incongruence, Syst. Biol., 44, 570, 10.1093/sysbio/44.4.570 Felsenstein, 1981, Evolutionary trees from DNA sequences, a maximum likelihood approach, J. Mol. Evol., 17, 368, 10.1007/BF01734359 Gorochov, A.V., 2001. The higher classification, phylogeny and evolution of the superfamily Stenopelmatoidea. In: The Biology of Wetas, King Crickets and their Allies, Field ed., pp. 3–33. Grauer, 2004, Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision, Trends Genet., 20, 80, 10.1016/j.tig.2003.12.003 Gu, 1995, Maximum likelihood estimation of heterogeneity of substitution rate among nucleotide sites, Mol. Biol. Evol., 12, 546 Hubbel, 1978, The systematics and the biology of the cave-crickets of the North American tribe Hadenoecinni (Orthoptera Saltatoria: Rhaphidophoridae: Dolichopodinae), Misc. Publ. Mus. Zool. Univ. Mich., 156, 1 Ketmaier, 2003, Phylogeography and molecular rates of subterranean aquatic Stenasellid Isopods with a peri-Thyrrenian distribution, Mol. Ecol., 12, 547, 10.1046/j.1365-294X.2003.01734.x Kluge, 1969, Quantitative phyletics and the evolution of anurans, Syst. Zool., 18, 1, 10.2307/2412407 Kocher, 1989, Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers, Proc. Natl. Acad. Sci. USA, 86, 6196, 10.1073/pnas.86.16.6196 Kumar, S., Tamura, K., Jakobsen, I.B., Nei, M., 2001. MEGA2: Molecular Evolutionary Genetics Analysis software, Arizona State University, Tempe, Arizona, USA. La Greca, 1990, The insect biogeography of west Mediterranean islands, Atti dei Convegni Lincei, 85, 459 Lanave, 1984, A new method for calculating evolutionary substitution rates, J. Mol. Evol., 20, 86, 10.1007/BF02101990 Leroy, 1967, Gryllides et grillacrides cavernicoles, Ann. Speol., 22, 659 Lipparini, T., 1976. Per la storia del popolamento delle isole dell’Arcipelago Toscano (contributo geo-paleontologico). Lavori della Società Italiana di Biogeografia 5, 13–25. Lunt, 1996, The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies, Insect Mol. Biol., 5, 153, 10.1111/j.1365-2583.1996.tb00049.x Mantel, 1967, The detection of disease clustering and a generalized regression approach, Cancer Res., 27, 209 Nei, 1978, Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics, 89, 583, 10.1093/genetics/89.3.583 Palumbi, 1996, Nucleic acids II: the polymerase chain reaction, 205 Posada, 1998, Modeltest: testing the model of DNA substitutions, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817 Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180 Saitou, 1987, The neighbourhood-Joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Saltet, 1967, Les Dolichopodes de Corse. I. Etude cytologique préliminaire, Bull. Soc. Hist. Nat. Touluse, 103, 265 Sanderson, 1989, Patterns of variation in levels of homoplasy, Evolution, 43, 1781, 10.2307/2409392 Sbordoni, 1982, Advances in speciation of cave animals, 219 Sbordoni, V., Allegrucci, G., Cesaroni, D., Cobolli Sbordoni, M., De Matthaeis, E.,1985. Genetic structure of populations and species of Dolichopoda cave crickets: evidence of peripatric divergence. In: Sbordoni, V. (Ed.), Genetics and Ecology in Contact Zones of Populations. Boll. Zool. 52, 95–114. Sbordoni, 1987, Microevolutionary studies in Dolichopodinae cave crickets, 514 Sbordoni, V., Allegrucci, G., Cesaroni, D., 2000. Population genetic structure, speciation and evolutionary rates in cave dwelling organisms. In: Wilkens, H., Culver, D., Humphrey, B. (Eds.), Ecosystems of the World, Subterranean Ecosystems. Elsevier, Amsterdam, pp. 450–483 (Chapter 24). Shimodaira, 2002, An approximately unbiased test of phylogenetic tree selection, Syst. Biol., 51, 492, 10.1080/10635150290069913 Shimodaira, 1999, Multiple comparisons of log-likelihoods with applications to phylogenetic inference, Mol. Biol. Evol., 16, 1114, 10.1093/oxfordjournals.molbev.a026201 Shimodaira, 2001, CONSEL: for assessing the confidence of phylogenetic tree selection, Bioinformatics, 17, 1246, 10.1093/bioinformatics/17.12.1246 Simon, 1994, Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers, Ann. Entomol. Soc. Am., 87, 651, 10.1093/aesa/87.6.651 Swofford, D., 2000. PAUP* B-Version 4.0. Sinauer, Sunderland. Tajima, 1993, Simple methods for testing the molecular evolutionary clock hypothesis, Genetics, 135, 599, 10.1093/genetics/135.2.599 Tamura, 1993, Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees, Mol. Biol. Evol., 10, 512 Thompson, 1997, The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 24, 4876, 10.1093/nar/25.24.4876 Venanzetti, 1993, Molecular phylogenies in Dolichopoda cave crickets and mtDNA rate calibration, Mol. Phylogenet. Evol., 2, 275, 10.1006/mpev.1993.1026 Yang, 1994, Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods, J. Mol. Evol., 39, 306, 10.1007/BF00160154